<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10944

Description Uncharacterized protein
SequenceMQRYHAGSCTNAVNNGAVGGPSHRDTGRSDLSSLPANFPVNSRRQQPQLAPYKLKCDKEPLNSRLGVPDFNPQTPNCLEETLTREYLQSGYRDTIEGLEEAREISLTQVPNFNKTVVLNCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGSQLAKPGIFPEIRPCGEDFRKKWIEGLSQPHKRLRSLADQVPHGYKGTLLLDVLIRNNVPLLRATWFIKVTYLNQVRPDSVGICSGTADKIHLSRSEVWSKDVINYLQTLLDEFFSKNSSHSTLRSTHTRERSLQMPYMGSMQHKSNRLLSVSDDEPSLHFRWWYIVRLLQWHHAEGLLLPSLVIDWVLSQLQENLFEVWQLLLPIIYGFLETVVLSQNYVRTIAEIALRVICGPAPGGSDLVDNSRRAYTIYALIEMLRYLILAVPDTFVGLDCFPLPSSVVSNTVSDGNFVLKSTEASGRIENSRDDFGYVFSSIHKNAEYLARAASPGYPGRCLAKVAKTLDKSLVLGDLRGAYKFLFEDLCDGTVSDDWVAKVSPCLRLSLKWFETISLSLIYSVFFLCEWATCDFRDFRTNPPCDIKFTGRKDLSQVHIAVRLLKMKMREMKISPRLTNGRNQRVSHLAKCSNQQQHNQNHLGNVSRSKSSSKCAGWSIFESPGPLHDIIVCWIDQHVMHKGEGYKRLHLFIVELVRAGIFYPIAYVRQLIVSGIMDMNVYVVDLGRKKRHYHILKQLPRCFMHEALEESGIVEGPQLDKAVQIYLNERRLILRSVPSDSEYRDDASISAKKRKQYPASTKNGASTVSTAQWKSILTNTVSSKSAMGDVNIEELKADIVLILQLPNSLSNLSTAGCDDSEGSIRRPVRSYKSKIDPVEGTPGCEECRGAKRQKISEERCSVVQGHSAVVPDDDDAWWVKRGLKSSEPLKTEQPPKSIKQVNKTRQKNVRKTQSLAQLQASRIKGSQGASSSHVCDNKVNCSHHRAALDGDKQRYVDSQTCHCGDIVSIGKALKRLRFVEKRAMAVWLMTVVKQVVEENEKNVGQFGRPFSIVDDRSSIRWELGEDELSLILYLMDISDDLVAASKFLIWLVPKVLNSSNQTIQSGRNVKMLPRNVENQICDVGEAFLISSLRRYENILVAADLIPEALSSIMYRAASIIASNGRVSGLGSMVFARYLLKKYSNVASVSEWEKTFKATSDARLSSELESGRSVDGELGLSLGVPVGVEDPDDFFRQKISGGRLPSRVGSGMKDVVQRNVDEAFHYFFGKDRKVIAAGGTPKGPALEKRDNGYQIAQHIVMGLIDCIRQTGGAAQEGDPSLICSAVSAIVSSVGPTLAKIPDFPSGNNHSNTMLASTSLNYARCILRMHITCLCLLKEALGERQSRVFEVALATEASAAIAGVFAPSKASRAQFQLSPDAHDSSTTLPNDVGGNSSKIVVARTTKIAAAVCALVVGAVIYGVTSLERMVTVLRLKEGLDVVQFARSTRSSSNGSARSIGAFKVDGSIEVHLHWFRLLVGNCRTICEGLVVELLGEPHIIALSRMQRMLPLSLVFPPAYLIFAFVKWWPCILNPNVAVREDMNQLHQSLTIAISDAIKHLPFRDVCFRDSQGLYDLMASDPSDTEFANLLEVNGSDMHLKSMAFVPLRSRLFLNAMIDCEMTQSIYTNGEGNNRLSGTGESKLKDMLVHVLDTLQPAKFHWQWVALRLLLNEQALIEKLETHDMSLAEAIQLSSSNPEKSAAASENENNFIEILLTRLLVRPDAAPLFSELVHLIGRSLEDSMLLQVKWFLGGQDVLFGRKTIRQRLRNIAESRELSVKTQFWEPWGWCSPCTDLATIKGDRKKFDTAFLEEREVVEVGMDPKRCLKGSSQVLDSESSSSNQLQVTERALIELLLPCIDQSSDESHSSFANDLIKQLNAIEQQITAVTHGASKPVGNTPPGVEGQKNKVNTRRTIKGGSPGLTRRANVATDSSPPSPAALRASISLRLQLLLRFLPILCTDREPSLRNMRHALSPIILRLLGSRVVHEDKDISMHCSLMRRKVVSSSEAASAAFVDSSAEGLFDLLLLVLHGLLSSYPPSWLRQKPDLKTINEHMRKLNGFDREILETMQNDLDHMQLPETIRWRIQAAMPILFPNTRFSFYCQPLHVPVSAVSCLQQSTINPGFKSSNSTAPQRNMVPLSRTATRTPGKAKQEDNDFQVDPWMLLEDGAGSCPSASNAASIGSGDHVNIRAASWLKGGIRVRRTDLTYVGAVDDDS
Length2240
PositionKinase
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.07
Grand average of hydropathy-0.228
Instability index48.37
Isoelectric point8.87
Molecular weight249203.68
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10944
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.53|      41|      45|     104|     144|       1
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   67-   99 (48.91/28.65)	.....V..PD.FNPQTP.NCLE..ETL.TREYLQSGYRDTI.EGLE
  104-  144 (65.86/41.30)	ISLTQV..PN.FNKTVVLNCKEAIRKR.LRAINESRAQKRK.AGQV
  149-  192 (47.76/27.80)	LSGSQLakPGiFPE..IRPCGEDFRKKwIEGLSQPHKRLRSlADQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.21|      51|     326|     276|     339|       2
---------------------------------------------------------------------------
  276-  339 (77.43/81.14)	RSTHTRERSLQmpymgsMQHKSNRLLSVSDDEPSLHFRWWYIvrllqwHHAEGlLLPSLVIDWV
  610-  660 (95.77/61.99)	RVSHLAKCSNQ......QQHNQNHLGNVSRSKSSSKCAGWSI......FESPG.PLHDIIVCWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.45|      41|     547|    1186|    1228|       3
---------------------------------------------------------------------------
 1186- 1228 (65.51/52.95)	ARLSSELES..GRSVDGELGLSLGVPVGVEDPddFFRQKISGGRL
 1748- 1790 (67.94/47.61)	APLFSELVHliGRSLEDSMLLQVKWFLGGQDV..LFGRKTIRQRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.70|      38|     547|     809|     895|       4
---------------------------------------------------------------------------
  844-  895 (51.35/101.16)	DSEGSIRRPVRSYKSKIdpvegtpgceecRGAKRQKISEERCSVVQGhsAVV
 1406- 1443 (62.34/22.71)	DSSTTLPNDVGGNSSKI............VVARTTKIAAAVCALVVG..AVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.96|      43|     546|     482|     526|       5
---------------------------------------------------------------------------
  444-  476 (43.28/28.74)	.........VLKSTEASGRIENSRDDFGYVFSSIHKNA.....EYLA
  482-  526 (67.62/60.28)	GYpgRCLAKVAKTLDKSLVLGDLRGAYKFLFEDLCDGTVSD..DWVA
  531-  564 (48.05/33.79)	CL..RLSLKWFETISLSLI.......YSVFF..LCEWATCDfrDF..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.21|      48|     326|     947|    1001|       6
---------------------------------------------------------------------------
  947- 1001 (77.80/77.51)	RIKGSQGAssSHVCDNKVNCSHHR..AALDGDkqryvDSQTCH.CGDIV.SIGKALKRL
 1273- 1324 (71.41/51.95)	RDNGYQIA..QHIVMGLIDCIRQTggAAQEGD.....PSLICSaVSAIVsSVGPTLAKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.53|      11|      40|     384|     396|      11
---------------------------------------------------------------------------
  384-  396 (18.11/14.40)	CGPAPggSDLVDN
  426-  436 (22.42/10.44)	CFPLP..SSVVSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.41|      19|     589|    1248|    1266|      14
---------------------------------------------------------------------------
 1248- 1266 (35.76/20.60)	FHYFFGKDRKVIAAGGTPK
 1828- 1846 (33.65/19.00)	FDTAFLEEREVVEVGMDPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     294.64|      97|     280|    1848|    1955|      17
---------------------------------------------------------------------------
 1848- 1955 (137.36/106.98)	CLKGSSqvLDSESSSSNQlQVTERALIELLLPCIDQSSDESHSSfaNDLikqlnAIEQQITAVTHGASKPVGNTPPGVeGQKNKVNTRRT..IKGG....SPGLTRRANVATDS
 2138- 2240 (157.28/92.17)	CLQQST..INPGFKSSNS.TAPQRNMVPLSRTATRTPGKAKQED..NDF.....QVDPWMLLEDGAGSCPSASNAASI.GSGDHVNIRAAswLKGGirvrRTDLTYVGAVDDDS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10944 with Med12 domain of Kingdom Viridiplantae
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