<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10941

Description Uncharacterized protein
SequenceMLTMETKSQNTMGNNMPSNQVGPSNKPPDQGLVMQPQVHNPGQQQPVPLPNQSQSRQQILSQNIQNNIAPQPNLPPVSSLPQTPSQNIGQNSNIQSIAGQNSVGSTMGQNSNMQNMFPGSQRQMPGRQQVLSQQQQQQSQNQQQYILQQQLFKHKLHLQSQMQQQQQQQNLLQPNQLQSSQQSVMQTSSILQPSMMQASSLSSLQHNQQANNVQQSTQSMLHQHPQVMRQQPQQTSAVHQQQTPMNQQQMLPAQKQQQQLMGSQSNATIMQHAQMLGAQNNVGDIQQTQRLHSQQNNLTNLQQRQQQLMNQQNNLTNMHQQQFGNNAPGLQQQQMLGPESGNPGMQTTHHSTHMKVPNPQQSQQHATNLLPPQAQQSQTQGAQQQLMPQINTQSSQLQQQFGLPQQPNSLQRDMQQRHQTSVSMLQQQNTIDQQKQLYQSQRALPETSTTSVDSTAQTSQSSGVDWQEEVYQKIQTMKESYLPELTEMYQRIAAKLQQHESLPQQPKSEQLDRARAFRTMLEHIIAFLKVPKNNISSNFKEKIGSYEKQIINLINANKPKKGMSSLPGQPPPSHMHSTSQPQPQVSQVQSHESQINPQLQPTNLQGSVATMQQNNMPNLQHNSMSGVSAAQQNMMNSMQSGTNLDSGQGNPMNSLQQVPLSSLQQNPISTPQQTNINSLSSQGGVHGIQPNLNTLQSGSSMLQHQQLKHQQEQQMLQSQQLKQHHQRQLLQRQQMLQQQQLHQPGKQQLSGQLQTHQMPQLYQMNDINDIKVRQGTGAKPGVFQQHLTSGQHSAYPHQQLKPGGPYPVSSPQLLQAASPQILQHSSPQVDQQNNLSSLTKVATPLQSSNSPFVGPTPSPPSAPSPMPGDSDKPIPGFSSISNAANIGHRQTVGAAAPAQSLAIGTPGISASPLLAEFSGPENALAATSGRSTVTEQPIENLIRVVKSMSHKTLSAAVSDIGSVVSMNDRIAGSAPGIGSRAAVGEDLASMTNCRLQARNFITQDGINGIKRMKRKTSAIPLNVVSSAGSLKDSILEASDLESTATSNVKRPKTEQANHTLLEEVREINNRLIDTVVEISNEDVVPTAAAAAAAEGAEGTIVKCSFRAVALSPTLKSQYASMQMSPIQPLRLLVPVNYPNCSPILLDKCPVESSMENEDLSMKAKSRINISLRSLSQPMSLGEIAKTWDICVRGTISEHAQQSGGGTFSSKYGTWDDCSD
Length1219
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.02
Grand average of hydropathy-0.795
Instability index72.47
Isoelectric point9.25
Molecular weight133854.12
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10941
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     838.40|     121|     123|      32|     152|       1
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   32-  126 (165.28/33.81)	.....................................LVMQPQVH.N................................................PGQ..QQP............VPLPNQSQ..S.RQQ...........ILS..QNIQNNI.APQPNL.PPVSSLPQ..TP........SQNI...GQNSNIQSIAGQNSV............G...STMGQNS...NM.....QNM....F....PG......S.....QRQM.......PG
  127-  232 (158.06/31.97)	RQQVLSQQ........QQQQSQNQQQYILQQQLFkhkLHLQSQMQ.Q................................................QQQ..QQN............LLQPNQLQ..S.SQQ...........SV.....MQTSS.ILQPSM.MQASSLSS..L..........QHN...QQANNV.....QQST............Q...SMLHQH.......................PQ......V.....MRQQ.......P.
  233-  344 (119.54/22.16)	.QQTSAVH........QQQTPMNQQQM...................L................................................PAQ..KQQ............QQLMG.SQ..S.NAT...........IM...QHAQ.ML.GAQNN....VGDIQQ..TQ.....rlhSQ......QN.NLTNL..QQRQ............Q...QLMNQQN...NL.....TNMhqqqFgnnaPG.....lQ.....QQQMlgpesgnPG
  359-  495 (122.60/22.95)	PQQ..SQQhatnllppQAQQSQTQGA...QQQL......M.PQIN.T................................................QSSqlQQQ............FGLPQQPN..S.LQRdmqqrhqtsvsMLQ..Q..QNTI.DQQKQLyQSQRALPE..TS........TTSVdstAQTSQSSGVDWQEEV............YqkiQTM.KESylpEL.....TEM....Y..................QRIA.......AK
  496-  618 (102.33/17.78)	LQQHESLP........QQPKSEQLD....RARAF.....................................................................rtmlehiiaflkVPKNNISS..NfKEK...........IGSyeKQIINLInANKPK..KGMSSLPG..QPppshmhstSQPQ...PQVSQVQSHESQ..I............N...PQL.QPT...NL.....Q............G......SvatmqQNNM.......PN
  619-  731 (107.90/19.20)	....L............QHNSMSGVS.AAQQNMM...NSMQSGTNlD................................................SGQ..GNP..............M....N..S.LQQ...........V....................PLSSLQQ..NP........I.ST...PQQTNINSLSSQGGVhgiqpnlntlqsG...SSMLQHQ...QLkhqqeQQM....L....QSqqlkqhH.....QRQL.......LQ
  732-  850 (62.70/ 7.70)	RQQMLQQQ........QLHQP.GKQQ..LSGQL..............qthqmpqlyqmndindikvrqgtgakpgvfqqhltsgqhsayphqqlkPGG..PYP............VSSPQLLQaaS.PQ............IL...QHSSPQV.DQQNNL....SSLTKvaTP........LQS.......SNS.................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     135.91|      35|      77|     870|     904|       2
---------------------------------------------------------------------------
  870-  901 (51.84/32.09)	.......SDKPI.PGFSSISNA.ANIGHRQTVGAA.APAQSL
  902-  933 (18.83/ 6.57)	AIGtpgiSASPLlAEFSGPENAlAATSGRSTV..........
  936-  963 (28.51/14.06)	.........QPI.ENL..IRVV.KSMSHK.TLSAAvSDIGSV
  964-  987 (36.73/20.41)	VSM....NDR.I.AG.....SA.PGIGSRAAVG......EDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.97|      31|      38|    1009|    1041|       3
---------------------------------------------------------------------------
 1009- 1039 (48.58/34.85)	IKRMKRKTSAIPL..NVVSSAGSLKDSILEASD
 1048- 1080 (45.39/25.80)	VKRPKTEQANHTLleEVREINNRLIDTVVEISN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10941 with Med15 domain of Kingdom Viridiplantae
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