<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10938

Description Uncharacterized protein
SequenceMDQIQKPVGTISRPHPSRILILNLFNLYLGRNSLQKRDDLIREPPNKAQKRVLALNRELPPPNEQFLQDFMQLKNQFPDQDQIRSVTESILILLVVQCSSHGIRAEFVLYAIRSLCSVEYINWDTFLPSLLSSVSSAEFPVDQGNQLMPTVYSSNFQPSNSASQLPSIHPMGYPARSTIEPLSSAALSPVKSPDTSYTGQHSQLKVPSIRNNDISSLRQLCCKIILIGLEFDLKPMVYSAIFNHMLSWLVNWDQRQQGIDEPDAPKSFRPDKAIIGWMHSCLDVIWLLVDEGKCRVPFYELLHSDLQFMDNIPDDEAIFTLILEIHRRRDMMAMNMQMLDQHLHCPTFGTHRILTQAAPNVSAEAVAHLRLTPITYLSVLGEPLHGEDIASSIQKGSLDWERALRCIRHAIRTTPSPDWWRRVLLLAPCYRPSSQGLSPGAVFSSEMILLLECLGDQHILKTNHVTWLFAQIMRVELVMNALNSDARKMETTRKILSFHREERNSDSNSPQSILLDFVSSCQSLCIWSLNSSTREFVNNELRQKGKLIDEWWKQVSKGDRMMDYMNMDKRSLGMFWVLSYTMTQPACETILKWLTSAGVIDLLSGTNLQPTERLVATREVSPLPMSLLSGMSMGSCMKLSLQLEESLFSGQHLAQKNPSLLSKPGVRLLVLEILNYRLLPLYRYEGKTKSLMYDVTKVISALKGKRGDHRVFRLAENLCLNLIFSLRDFFMIKREGKGPTEFTETLNRETVITLAILIKTRGIANAEHMLYLRTMIEQILATSTHTWSEKTLRYFPSVLREALSGLLIDKRSLAVQAWQQAETIVLHQCTQILSSSADASYVTTYIGHSFPQHRQYLCAGAWILMHGHAETINGGNLGRVLGEFSPEEVTSNIYTMVDVLLHHMQMQLQQGHALQDLLLKACASLGFFVWTNELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKHFCMTRGHHEHWLYSGIFKRVDPSKALGNYLSWKDRYPVFFDDIAARLLPVIPLIIYRLIENDAMEPADRILALYSSLLVYYPLRFSFVRDILSYFYGHLPAKLIVRILQVLDINKIPFSVSFPQQISSSNPATCPPLDYFGTLLLGIVNNVIPQLHNSKSGSMEDASNNALRTPPNKPPGVSQPEPENAPEGKKAFYQIQDPGTYTQLVLETAVVEILSLPVSASQIVHSLVQIIVNIQSMLIQSSNGLHGGLNGAGQGSVFPTSPSGGSSDSLGASRSSPSVSGINTSNFAARSGYTWQQLSCLLIQACGLLLSQLPSDFHFQFYLETTRIIKENWWIADGKRSLGEIDSAIGYALLDPTSAAENNTSTPNGNVVALLHSFFSNLPLEWLERTHVIIKQLQPVTSVAMLRIAFRIMGPLLPKLVGAHALFNKTLSLLLSIVVDVFGTNSQHSTAVEASEITDLIDFIHHVVHYEGQGGPVQASSKPRPEVLALIESSSENLRPDIRHLMLHLKTNVNSSIYAAMSHPK
Length1501
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.08
Grand average of hydropathy-0.056
Instability index47.66
Isoelectric point6.82
Molecular weight168742.72
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10938
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.57|      13|      16|     165|     177|       1
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  165-  177 (25.99/14.05)	LPS..IHPMGYPARS
  182-  196 (17.58/ 7.04)	LSSaaLSPVKSPDTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1307.36|     336|     350|     525|     874|       2
---------------------------------------------------------------------------
  252-  524 (304.40/183.97)	............................WDQRQQGIDEPDapkSFRPDKAIIG...W........MHS.......CLDVIWLLVDEGkcrvpFYELLH...SDLQF.MDNIPDDEAIFTLILEIHRRR........DM...MAMNMQmLDQHLhcptF....GTHriLTQAAPNV.SAEAVAHL.RLTPITYlSVL....gePLH.GEDIASSIQ..KG.....SLDWERALRCIR..HAIRTTPSPDWWRRV.LLLAPCYRPSSQGLSP...G..................AVFSSEMILLLECLGDQhILKTNHVTW......LFAQIMRVELvmNALNSDARKMettrkilsfhreeRNSDSNSPQSILL.......................DFVS....SCQSL.................
  525-  874 (528.41/363.23)	CIWSLNSSTREFVNNELRQKGKLIDE.WWKQVSKGDRMMD...YMNMDKRSLGMF.W........VLSYTMTQPACETILKWLTSAG.....VIDLLSG..TNLQP.TERLVATREVSPLPMSLLSGM........SMGSCMKLSLQ.LEESL....FS...GQH..LAQKNPSLLSKPGVRLL.VLEILNY.RLL......PLYRYEGKTKSLM..YD.....VTKVISALKGKRGDHRVFRLAENLCLNLI.FSLRDFFMIKREGKGPTEfTETLNRETVITLAILiktRGIANAEHMLYLRTMIEQ.ILATSTHTWSEKTlrYFPSVLREAL..SGLLIDKRSL.............AVQAWQQAETIVLH.QCTQILSSSADASYVTtyigHSFPQ....HRQYLCAGAWILmHGhaeTING
  889- 1227 (399.43/245.42)	...........VTSNIYTMVDVLLHH.MQMQLQQGHALQD...LLLKACASLGFFvWtnellpldILLLALIDRDDDPHALRI.........VISLLDR..QELQQrVKHFCMTR..GHHEHWLYSGIfkrvdpskALGN..YLSWK......................DRYPVFFDDIAARLLpVIPLIIY.RLIendamePADRILALYSSLLvyYPlrfsfVRDILSYFYGHLPAKLIVRILQVLDINKIpFSVS..FPQQISSSNPAT.CPPLDYFGTLLLGIV...NNVIPQLHNSKSGSM.ED.ASNNALRTPPNKP....PGVSQPEP..ENAPEGKKAF............yQIQDPGTYTQLVLEtAVVEILSLPVSASQIV....HSLVQiivnIQSMLIQSSNGL.HG...GLNG
 1282- 1410 (75.12/35.63)	CGLLLSQLPSDFHFQFYLETTRIIKEnWW..IADG.............KRSLGEIdS........AIGYALLDPTSAAENNTSTPNG....nVVALLHSffSNL.P.LEWLERTHVI....IKQLQPV........TSVAMLRIAFR.IMGPL....LPklvGAH.aLFNKTLSLL..........................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.44|      11|      16|     136|     146|       4
---------------------------------------------------------------------------
  136-  146 (20.27/13.18)	SAEF.PVDQGNQ
  153-  164 (15.17/ 7.72)	SSNFqPSNSASQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10938 with Med23 domain of Kingdom Viridiplantae
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