<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10925

Description U-box domain-containing protein 52
SequenceMFCKLRLIKRKKMWLPNNKGSPANRRGNGTGVVAIAIDKDKGSQYAIKWATDNLVNRGQTLVLIHVVTKPTSSSYGNCGGVHVVDGNLSAHGQNLEKQTKELFLTFHCFCTRKDIRCLDVILEDSDVTKALTEYMSSAAIQNLVLGASRHGFIRRLKVTDIPSTVSKGAPDFCTVYVISKSKISSVKNASRPAPMASPLYKQIQQLEEQVNSAGTTPTARTRAIHAGSVVDRSQRRSFISDESKKIGSPFDRRGILPSRIFSDLSEADTDLSFVSSGRPSTDHTSSMLFHDGMDSGRISQISTSSDSSFGSERLGARGSELSSFNDFSSSSFETDDGEAEMRRLKMELQRTMDLYSTACKEALTAKQKSEELNVWRMEEEKRLEEARLAEEAAKLAAEKERDKCKVAMETAEAAQRLAELEAKRRVDAEMQALKEAEQKERALMNLGQGDFRYRRYSIEEIEEATQFFTDSLKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSRMRHPNMVLLLGACPEYGCLVYEYMANGSLEERLMRRGDKRSISWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLSRLVPPSTTEEVTQYRITSAAGTFCYIDPEYQQTGMLGVKSDVYSLGILLLQLVTAKPAMGITHYVSQCIETGAFKEALDPSVPDWPIEEALNFANLALQCAELRRKDRPDLGKVVLPELNRLRALTEENMGQLLIGGSAGPSPSHSQASISQEISSDPQVHSGFSSKSVSNSSASQEKHSGSGDE
Length797
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.440
Instability index50.22
Isoelectric point7.00
Molecular weight88241.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10925
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     143.86|      28|      28|     411|     438|       1
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  338-  361 (24.86/13.34)	.EAEMRRLKMELQ.RTMDLYSTACKE...
  364-  385 (20.47/ 9.67)	.TAKQKSEELNVW.RM..EEEKRLEE...
  387-  409 (23.63/12.31)	.....RLAEEAAK.LAAEKERDKCKVAME
  411-  438 (42.47/28.01)	AEAAQRLAELEAK.RRVDAEMQALKEAEQ
  440-  466 (32.42/19.64)	ERALMNLGQGDFRyRRYSIE..EIEEATQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.94|      54|      61|     207|     265|       2
---------------------------------------------------------------------------
  207-  265 (81.64/59.57)	EEQVN..SAGTTPTARTRAIHAGSVVDRSQrrsfISDESKKIGSPFDR.....RGILPSRiFSDLS
  268-  328 (83.31/47.90)	DTDLSfvSSGRPSTDHTSSMLFHDGMDSGR....ISQISTSSDSSFGSerlgaRGSELSS.FNDFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.56|      59|     137|     507|     565|       4
---------------------------------------------------------------------------
  507-  565 (106.17/68.59)	QFQQE..VEVLSRMRHPNMVL..LLGACPEYGCLVY..EYMANGSLEERLMRRGDKRSISWQLRF
  641-  705 (88.39/55.93)	EYQQTgmLGVKSDVYSLGILLlqLVTAKPAMGITHYvsQCIETGAFKEALDPSVPDWPIEEALNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.62|      20|      35|     115|     134|       6
---------------------------------------------------------------------------
  115-  134 (33.40/21.01)	IRCLDVILEDSDVTKALTEY
  153-  172 (34.21/21.68)	IRRLKVTDIPSTVSKGAPDF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10925 with Med32 domain of Kingdom Viridiplantae
Unable to open file!