<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10923

Description U-box domain-containing protein 34
SequenceMGSTMKVKVDGDGNGAPPSAAAAMVNVAVAVKSTEGKGSQRAVRWAIEKLLPKARRIFLIHVMPTITAIPTPSGESIPVNELDDNVVEMYVEDMRAKCKEIFILFKNLCKRKSVEIVVLEGDNPATLLLQYVMQAGINTLVLGSSSPSYFSRRQKDSGVPSVILKHAPESCDVYVVSSNGLVKDSLSPLLPTETEVSTINQQESNVSYAAMEFNRRAASLPDFTHLNSPAFAHGNSSIHIRSQQRYKQNVEEFTAGPEVVNGGHSSTCSEQSDIQAEMERMRLELQNTIAMYNQTCEHLIHAQNKVQLLSSECLEEARRVNAAQKREENLRKTAAEAKKKHVEMEKEVKIARKLLAEEACERQIAELKALQRSLEKQKVVDALMSCDGRYRRLTREEIEVATDFFSDSKMIGEGGYGKVYKGNLDHTPVAIKILHPDASQKKEEFLREVEVLSQLHHPNIVLLLGASPENGCLVYEYMENGSLEDYIFQGKNRPLPWFVRFRILFEVACGLAFLHNSKPEPIVHRDLKPGNILLDKSYASKIGDVGLAKIMSDIVPESITEYRDSIIAGTLAYMDPEYQRTGTLRPKSDLYAFGIIALQLLAACHPNGLIMKFEKAIVSNSLADVLDKSVVDWPLIEAEELAKMALQCCKLRCRDRPDLETEVLPLLKKLSEFAEMHVKSEKNLIQAPSQYFCPILQEVMENPHIAADGFSYEHRAIKAWVDRHNVSPVTKQRLQHKMLTPNHTLRLAIQDWKSHL
Length756
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.294
Instability index53.95
Isoelectric point6.56
Molecular weight84750.51
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10923
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.15|      27|      27|     320|     346|       1
---------------------------------------------------------------------------
  320-  346 (43.31/31.19)	VNAAQK..REENLRKTAAEAKKKHVEMEK
  348-  376 (37.83/26.29)	VKIARKllAEEACERQIAELKALQRSLEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.47|      14|      27|     222|     243|       2
---------------------------------------------------------------------------
  222-  237 (21.50/23.94)	DFThlNSPAFAHGNSS
  252-  265 (25.97/ 8.20)	EFT..AGPEVVNGGHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.30|      19|      27|     381|     399|       3
---------------------------------------------------------------------------
  381-  399 (32.99/24.48)	DALMSCDGRYRRLTREEIE
  407-  425 (33.31/24.80)	DSKMIGEGGYGKVYKGNLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.69|      14|     406|     155|     169|       5
---------------------------------------------------------------------------
  134-  147 (20.87/ 7.81)	QAGINTLVLGSSSP
  156-  169 (23.82/16.12)	DSGVPSVILKHAPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10923 with Med32 domain of Kingdom Viridiplantae
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