<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10920

Description U-box domain-containing protein 34
SequenceMKVNADGDTGGSPPSTTATVTVAVAVKSTEGKGSQRAVKWAVEKLLAKAHRFVLIHVMPTITTIPTPSGESTLVDELEANVVKLYMEDKRAQCEEIFIPFKILCKRKNVETLVLEGNNPATVLLKYVNDSGIKSLVLGSYSPNYFSRKLKGSSVPSIILKHAPECCDVYVVSSNKLMTNSLNPLLATEGDLPTIDKQKSSASSASIDGVSHSRSSSLASSHLNFPAFVDGDSSNYVSLQHKLNQNLEDVTTGLETVKECHSSTYSEQLDIQDEVEKVRLELQTTLAMYNQTCEDLIHTRNKVQLFSSQYLEESRKVNAAKKREENLRKIAAEEKERHIEAEKEVETARKLLSEETYERQIAELKALQQSLEKKKTVDALLSSDHRYRRLTREEIEVATDYFCESKMIGEGAYGKVYKGHLDHTPVAIKVLCSDASEKKEEFLREVEVLSQLHHPHIVLLLGACPENGCLVYEYMENGSLEDCILEQNSKPFPWFSRLRILFEVACALAFLHNSKPEPIVHRDLKPGNILLDKNFVSKIGDVGLAKIISDVVPESVTEYRNSVLAGTLGYMDPEYQRTGTLRPKSDLYAFGIITLQLLAACRPNGLIMMFENAINSNSLVDILDKSVPDWPLTEAEELGRMALKCCNLRCRDRPDLETEVLPLLKRLAEFADMHSKVEENLIQAPNPYLCPIVQEVMEDPHIAADGFTYEHRAIKLWLTRHSVSPVTKQILQHKLVTPNRTLRLAIQEWRSQLTSFRPRS
Length759
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.317
Instability index47.91
Isoelectric point6.05
Molecular weight85205.52
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.66|      26|      27|     229|     255|       1
---------------------------------------------------------------------------
  229-  255 (40.16/42.22)	DGDSSNYvSLQHKLNQNLEDVTTGLET
  258-  283 (44.50/40.45)	ECHSSTY.SEQLDIQDEVEKVRLELQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.13|      20|      20|     317|     336|       2
---------------------------------------------------------------------------
  317-  336 (32.07/24.34)	NAAKKREENLRKIAAEEK.ER
  338-  358 (27.06/19.24)	IEAEKEVETARKLLSEETyER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.22|      13|      20|     130|     143|       3
---------------------------------------------------------------------------
  130-  143 (17.01/15.27)	SGIKSLVLgSYSPN
  152-  164 (21.22/13.33)	SSVPSIIL.KHAPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.14|      20|     482|     165|     185|       4
---------------------------------------------------------------------------
  165-  185 (32.44/25.66)	CCDVYVVSSNKLMTNSLnPLL
  644-  663 (38.69/25.59)	CCNLRCRDRPDLETEVL.PLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.69|      44|     135|     449|     493|       5
---------------------------------------------------------------------------
  449-  493 (81.69/67.36)	SQLHHPHIV..LLLGACPENGCLVYEYMENG....SLEDcILEQNSKPFP.W
  497-  525 (33.73/20.42)	.............LRILFEVAC.ALAFLHNS....KPEP.IVHRDLKP....
  584-  629 (56.26/39.46)	SDLYAFGIItlQLLAACRPNG.LIMMF.ENAinsnSLVD.ILD...KSVPdW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10920 with Med32 domain of Kingdom Viridiplantae
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