<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10916
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKIGGLHQISWFQFLPHESDVSSLVDKSVKLDKKDAATWLVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGQHSSVVEKAQSAVSKLRVLASGLWVAPGDSEEVAAALSQALRNCMERKLRGLSYVRYGDVFTRHHPFSQNEELFRKGQPVVEFIFSATEEAIFVHVIISAKHIRALSSGDIDKISEDTSNVSGERLPVIVSPHGMRGRLTGCCPADLVKQVYLSSCKFSASNGIVGLPCNVSRSGYQLKGQNCYVEVSLGCTTPGNNNIKESSRMLIYPPEAILVPVVQTACARSSLKRFWLQNWIGPSLSFTSSLMHCFDFSSDAKVDSTDGSWLDANIMRSNRHYNSSSNSNSSSVSSVSTSSSDSDYKTSGAGDLEADADSLMCRPSGLSSVDQSQNDNLKAGFKRSRTGISESFNQAGAVINPSTSDYASMEVNNSAITGGNDQTGLQWGWDDDDRGVGMDIQALLSEFGDFGDFFENDVLPFGEPPGTAESQALMFPAADSADIGSSPCPSMMDVQDQMLLPVGFPSFDSFNQPPPPASLDDSLSKQQEVIKSTAVANQVNNASAAIAGEFDHLIKAEALMTFAPEYGAVETPTGEKSHSIFRNPYLPKSREVDTSNSSSNSYVYSATPPLSPCFDACEGKSGVTVNLKTGAGRRDTSSIIQSKRYYTHIESGKQKNDGKLCGSDHSCATREAQVAQSPFYGFNSTNSVKSIHNKTEKANEALLKADSFGQSMKTVLATEVECLMCQAFMCKIRHTLLSSSSYLPVGASRMSGSTIINQPQGEAVVTVDNMSSKSEMKKKEIIPVRIAGDIDGGLLDGTLNAPVGVWRSVGVSKGMKQPSSALEACHSVQHNSFIEESMLAYGLRQPLQELLDGMALLVQQATSLVDVALDADNNDGPYGWLALQEQWRRGFSCGPSMVHAGCGGVLASCHSLDIAGVELIDPLSADVQASFTLTLLQNDIKTAMKSAFGTMEGPLSVVDWCKGRSQSNDGGISGDGFSVESTASASECRDSSSTISFSVGEPISPSQSSAGGSSLKDGIRVDEASERRLSQDTCLSESEQLPGSRLRPTLSAVPYPAILVGYQDDWLKTSPSSLQLWEKAPFEPYAMPKHMSYYVVCPDINALTTAATDFFQQLGTVYETCKLGTHSPQCMGNEMEIDSGKNVSSGFVLIDCPQSMKIDSSSTSMLGSISDYFLSLSNGWDLESYLKSLSKVLRNLKLSSCMTMNPKEGSTGPCTVIYVVCPFPEPLAVLQTVVESSIAVGSVVLSSDKERRSTLQNQVGKALSYSAAVDESLSNVLTLSGFCIPKLILQIVTVDAIFRVTSPALSELLVLKEIAFTVYNKARRISRGSSSDMVQSSSMSGRSHPVLMQMTSPVPGMWKDCVGPRSIGTSLQREAELDASLRSGSWDNWQTSRGGSLGCDPNRIGDFSIQDEVRYLFEPLYILAEPGSLDRGLSFPMSGNLMAESSKLLLDDGTSGNFMQSSASSGGGDTGPNTQSETSEPDGSGSAHQKSLPSLHCCYGWTEDWRWLVCIWTDSRGELLDNYIYPFGGVSSRQDTKGLQSLFVQILQQGCQILQACPPESAIAKPRDFVIARIGSFFELECQEWQKALYAIGGSEVKKWSLQLRRSVPDGMSASSNGTSLQQQEIGLIQERALPPSPSPLYNPHSKVSSFMKGGMGQPSTRKQLIGGQGMVDNSRGLLQWVQSISFVSVSIDHSLQLMFQADIVSHGASQSSGVVSQPGYLEGYTPVKSLGSTSTSYILIPSPNMRFLPPVGLQLRTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPTMRRDARSISKEEWPSVLSVGLVDYYGGSNIIQEKFLKGVGKVGGRGTGSETRDVEVETHLILENIAAELHALSWMTVSPAYLERRSALPFHCDMVLRLRRLLHFADKEVSRQPVKTQV |
Length | 1957 |
Position | Kinase |
Organism | Nicotiana attenuata (Coyote tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae>
Nicotiana.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.216 |
Instability index | 54.25 |
Isoelectric point | 5.49 |
Molecular weight | 211597.23 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10916
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 144.35| 36| 38| 1010| 1045| 1
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384- 411 (39.00/18.85) TS....SSDSDYKTS.GAG.DLEADADSLMCRPS........
1010- 1045 (65.24/37.37) GR....SQSNDGGIS.GDGFSVESTASASECRDSSST.ISFS
1047- 1085 (40.10/19.63) GEpispSQSSAGGSSlKDGIRVD...EASERRLSQDTcLSES
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 415.89| 95| 122| 1375| 1469| 2
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1375- 1469 (167.44/97.88) GSSSDMVQSSSMSGRSHPVLMQMTSPVP...GMWKDCVGPRSIGTSLQRE.AELDASL.RSGSWD....NWQTSRGGSLGCDPNRIGDFSIQDEVRYL...FEPLYI
1500- 1591 (132.65/75.71) GTSGNFMQSSASSGGGD........TGP...NTQSETSEPDGSGSAHQKSlPSLHCCYgWTEDWRwlvcIWTDSRGELLDNYIYPFGGVSSRQDTKGL....QSLFV
1603- 1689 (115.80/64.98) ACPPE....SAIAKPRDFVIARIGSFFElecQEWQKAL..YAIGGSEVKK.WSL..QL.RRSVPD....GMSASSNGT.SLQQQEIG..LIQE..RALppsPSPLY.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 163.13| 46| 641| 1173| 1239| 3
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617- 662 (82.87/34.93) ETPTGEKSHSIFRNPYLPKSREVDTSNSSSNSYVYSATPPLSPCFD
1183- 1228 (80.26/47.15) EIDSGKNVSSGFVLIDCPQSMKIDSSSTSMLGSISDYFLSLSNGWD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 145.21| 45| 959| 289| 333| 4
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289- 333 (84.66/54.90) NIKESSRMLIYP...................PEAILVPVVQTACARSSL.......KRFWLQNWIGPSLSF
1242- 1312 (60.55/37.00) NLKLSSCMTMNPkegstgpctviyvvcpfpePLAVLQTVVESSIAVGSVvlssdkeRRSTLQNQVGKALSY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 118.71| 40| 959| 779| 821| 5
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779- 821 (59.08/39.63) IRHT..LLSSSSYLPVGASRMSGstIINQPqG..EAVVTVDNMSSKS
1739- 1782 (59.63/31.20) IDHSlqLMFQADIVSHGASQSSG..VVSQP.GylEGYTPVKSLGSTS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 87.18| 24| 40| 486| 511| 16
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486- 511 (40.26/33.28) DIQAllSEFGDFGDFFENDVLPFGEP
529- 552 (46.92/32.24) DIGS..SPCPSMMDVQDQMLLPVGFP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.71| 28| 1158| 669| 698| 17
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669- 698 (43.56/39.52) GVTVNLKTGAGRRDTSSIiqSKRYYTHIES
1830- 1857 (49.15/37.03) GFVVSKAVPTMRRDARSI..SKEEWPSVLS
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