<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10915

Description Mediator of rna polymerase ii transcription subunit 16
SequenceMNNQQPPPPPLVAVKDSEEESSSAITTTNSLEASIKVQDKPDTGEDDHPGTAIVATEKEVSSVDNDDPMDEDSVNPATVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQTSQGPANLVRDASCWQREYEWRQDIAVVTKWLSGVSPYRWLSTRTGGSAKSTFEEKFLSQQPQSPAGWPNFLCVCSVFSSGSVQLHWSQWPPNQNGTPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAIPKTSVSNGVPPSLNPPSWDGFAPLAAYLFSWQEYLLQEAKQGKKLMEQHYNDMVALHCSPVSNFSAYVSPEAAAQSTATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVLHQIFGNPTSSFGGQAPKQTVWVSKVIKCIPAGNDFKRPLAVGAGPVSDGRNMADSGVEMGKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHVFSGPSFTPVDNYHIDVGSAISAPAFSSTSCCSASVWHDTSRDCTILKIIRVLPPAVPSNQGKADSANWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVALNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALTNPSALVPEPWQASSETLFGIDPEAMAVEPALVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTPSVASPATSQGAQGGTASSTGSTQMQAWVQGAIAKISCTADSIPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRGTQLPRFMGAAQRNADSSMQKPQPSIPGKAEDSNSGAKPTGAKGSEEGPSKRSRIGSGNAGQGYTYEEVRVLFLILMDLCRRTAGLVHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDSEDMGGVDDNSKLSPSRDLTECSSSENCDVSYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFTSPGGNPSATQNEKEVWWISRWAYGCPMCGGTWVRVV
Length1240
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.08
Grand average of hydropathy-0.191
Instability index47.26
Isoelectric point5.94
Molecular weight133726.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10915
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.91|      38|     112|     406|     443|       1
---------------------------------------------------------------------------
  406-  443 (68.91/35.99)	LH...CSPV.SNFSAYVSPEAAAQSTATTTWGSGVTA...VAFDP
  488-  513 (29.05/10.87)	LHqifGNPT.SSFGG........QAPKQTVWVSKV..........
  516-  555 (48.94/23.40)	.....CIPAgNDFKRPLAVGAGPVSDGRNMADSGVEMgkrVSFDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.89|      23|     517|     658|     685|       2
---------------------------------------------------------------------------
  658-  680 (47.05/21.11)	RAIAERFWWSLLVGVDWWDAVGC
 1175- 1196 (41.65/17.34)	RDVVTAVWKTGLEGV.WYKCIRC
 1217- 1229 (29.19/11.91)	KEV....WW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.72|      20|     112|     799|     820|       3
---------------------------------------------------------------------------
  799-  820 (32.55/24.80)	VDAILDlaSHFITRLRRYASFC
  916-  935 (41.17/25.41)	VRLIGD..CHFLHRLCQLLHFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.84|      46|     517|     309|     373|       4
---------------------------------------------------------------------------
   89-  136 (79.08/30.08)	SNLLHKMSVPeLCRNFSAVAWC...GKLNAIACASETCAR..IPSSnANPPFW
  318-  368 (76.76/46.39)	SGAMHVAGVP.IVNPSTVVVWEvtpGPGNGFQAIPKTSVSngVPPS.LNPPSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.85|      23|     175|     696|     718|       7
---------------------------------------------------------------------------
  696-  718 (42.27/21.95)	IAVLDADFHSLPSTQHRQQYGPS
  876-  898 (41.58/21.47)	IAKISCTADSIPSSAPNPITGPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.58|      53|     331|     729|     783|      10
---------------------------------------------------------------------------
  729-  783 (81.36/47.49)	GTNAQEV.RAMVLDmQARLLLDMLGKGIESALTNPSALVPEPWqASSETLFGIDPE
 1062- 1115 (96.22/48.63)	GPHMQNMpRPRGAD.AAGLLLRELELHPPAEEWHRRNMFGGPW.SDSEDMGGVDDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      13|     317|     641|     653|      12
---------------------------------------------------------------------------
  641-  653 (26.23/14.01)	PPAVPSNQGKADS
  944-  956 (23.49/11.74)	PRFMGAAQRNADS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10915 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAAQRNADSSMQKPQPSIPGKAEDSNSGAKPTGAKGSEEGPSKRSRIGSGN
2) GTGGSRSMVTSPTPSVASPATSQGAQGGTASSTG
3) MNNQQPPPPPLVAVKDSEEESSSAITTTNSLEASIKVQDKPDTGEDDHPGTAIVATEKEVSSVDNDDPMDED
948
831
1
998
864
72










Molecular Recognition Features






MoRF SequenceStartStop




1) PPLVAVKDSEEESSSAITTTNSLEASIKVQD
9
39