<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10910

Description Atp-dependent dna helicase q-like 4a
SequenceMRTVNSAGGSMSKDKLPKVNWTQHATAHENFSCQDKFLTSNFLFSLPTQKPRVREQMNARSMACQVRSVPKLETEKAWKLLNSLKLSSKSYTRPGKTLPLTKDNKTFSQHSHHTHVPRASDVNYASARCTPLHQGVDENSEYSDTTRHAGNRFPSHSSGVAETGNFVNRQNGEDTSVANNSHSRGIGGVSSNHAIGVSKTRESDSTCADGTEEDDILQNIDIDQIVEHYQTNCTPRPSVSRCPPITPVTDSKCLAGSEETNLPPELSLNCNHGLKLGLCPEALDHLQEMKDRLINISNDLLDNVSELSLEQVEMLRQERSQLKLKIQHLEKFLQTASGNEERRMSQFSASTQTSAFQYETPRAVPSRIDPIRLDTQFHGYSESGGFGNWNSSSLSFDVTGGYGLSTAPVEREPYIPKYLEVKYTEGSNDKKWSSRDFPWTKKLEADNKKVFGNPSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQVNIPAAYLSSNMEWTEQQEILRELNSDVCKYKFLYVTPEKVAKSDVLLRHLESLHTRESLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPTVPVLALTATATMSVKEDVVQALGLANCIIFRQSFNRPNLRYSVIPKTKKCLEDIDNFIKKFHFDQCGIIYCLSRMDCERVAEKLQEYGHKAAFYHGSMEGAQRANIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLPSSCVLYYSYSDYIRVKHMISQGTVDQNSFGSGYGRSNVAASGRILETNVENLLRMVSYCENDVDCRRLLQLIHFGEKFESANCRKTCDNCSKIQKCIEKDVTEVAKQLVELVKMTGQKFSSAHVLEVYRGSLSQYVKKHRHESLRLHGAGKHLAKGEASRVLRHLVTENILVEDVKKSDLYGSVSSVLKVNESKAYNLFSGAQTMRLRLPSSVTQSKLGKFEATPAKGSLTSGKQSPPSTDPSAVPQSPVDTNLSAKLYTALRRLRTLLVKEAGDGVMAYHIFGDATMQQISIKVPRTTDELLDINGIGKVKITKYGDRVLETIEATINEHYKSAKTNSSGNDSTDSGKKRRNSINVQNANSKDEEDFTGSTGHSKKRVLKKQNKNPEVIDYRDLGYFDECMDGDIDFDESMMP
Length1186
PositionUnknown
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.545
Instability index43.05
Isoelectric point8.39
Molecular weight132637.35
Publications









Function






Annotated function


GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10910
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.70|      25|      28|     155|     179|       1
---------------------------------------------------------------------------
  135-  150 (20.44/ 8.25)	....GV.DE........NSEYSDTTRHAG
  155-  179 (42.76/25.25)	SHSSGV.AETGNF...VNRQNGEDTSVAN
  181-  209 (31.50/16.67)	SHSRGIgGVSSNHaigVSKTRESDSTCAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.60|      50|     123|     229|     280|       2
---------------------------------------------------------------------------
  229-  280 (91.37/63.76)	YQTNC......................TPRPSVSRCPPITpvTDSKCLAGSEETNL....PPELSLNCNHGLKLGLCP
  333-  408 (71.23/42.99)	LQTASgneerrmsqfsastqtsafqyeTPRAVPSRIDPIR..LDTQFHGYSESGGFgnwnSSSLSFDVTGGYGLSTAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.42|      22|      38|     832|     853|       3
---------------------------------------------------------------------------
  832-  853 (40.40/33.16)	ENDVD..CRRLLQLIHF.GEKFESA
  870-  894 (28.02/20.33)	EKDVTevAKQLVELVKMtGQKFSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     294.87|      95|     409|     610|     763|       4
---------------------------------------------------------------------------
  655-  763 (146.86/174.71)	IPKTKKCLEDIdNFIKKFHFDQCGiiyclSRMdCERVAEKLQEYgHKAAFYHGSME.....GAQR...ANIQKQWSKDEINIICATvafgmGINKPDVrFVIHHSLPKSIE....GYHQEC
 1067- 1173 (148.00/72.68)	VPRTTDELLDI.NGIGKVKITKYG.....DRV.LETIEATINEH.YKSAKTNSSGNdstdsGKKRrnsINVQNANSKDEEDFTGST.....GHSKKRV.LKKQNKNPEVIDyrdlGYFDEC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.26|      11|      23|     928|     940|       5
---------------------------------------------------------------------------
  928-  940 (13.88/15.56)	GEASRVLRhlVTE
  954-  964 (18.38/11.20)	GSVSSVLK..VNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.16|      46|      49|     551|     598|       6
---------------------------------------------------------------------------
  551-  598 (70.83/50.83)	LYVTPEKVAKSDVL.LRHLESLHTRESLARiVIDEAHCVsQWGHDF.RPD
  602-  649 (67.33/40.05)	LGILKQKFPTVPVLaLTATATMSVKEDVVQ.ALGLANCI.IFRQSFnRPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.24|      19|      31|     970|     988|       7
---------------------------------------------------------------------------
  970-  988 (33.82/22.13)	LFSGAQTMRLRLPSSVTQS
 1002- 1020 (35.42/23.56)	LTSGKQSPPSTDPSAVPQS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10910 with Med34 domain of Kingdom Viridiplantae
Unable to open file!