<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10906

Description U-box domain-containing protein 34
SequenceMMMSQKSSSGEKKGEEKATVVAIDKDKGSQYALKWAVDNLLGKGKTVTLLHVKLRPSNSLPNADVNDGTPRVYRSDPDSQAKELFLPFRCFCNRKNIHVNEVVIEGMDIANSISDYVAANITENLVMGAASRNGFVNRFKTLDVPSSVSKIAPGFCTVYVIAKGKVLSIRNASAPVPNPPPSLLQNQTSSSLGAKLGFIEARYAPSNDSRGSMADRSPYAPRSSTEDSDFIKSPFNRGKPVNRSYGDLSVAESDISFVSSNRPSSDRTFPISSDSYDLGLPPRLSNSSDTDNRFSAPRLSNSSETDSRLSFGSSFSATRLSEVNAFSSNSFDSANGSTNNLEDIEAEMRRLKQELKQTMDMYSTACKEALSAKHKALELHRWKVEEEQRLEEARLAEEAALAIAEKEKAKCKAALEAAEEAQRIAEREAQRRITAERRALKEAEEKKKVLDALAQSDCRYRKYTIEEIEAATENFAASRKIGEGGYGPVYKCYLDHTQVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEFGCLVYEYMANGSLDDRLFRRGNTPVLPWQLRFRIAAEVGTSLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSFGIMLLQIITARPPMGLTHHVERAIEKGTFTEMLDPAVPDWPVEEALTFAKLALKCAELRRKDRPDLGTVVLPELNRLRLLAEEAMPQMPFGSSPKTPSTESRSSSQVISGYDSSKSRSTNPFSSDATSSG
Length794
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.462
Instability index53.44
Isoelectric point7.85
Molecular weight87624.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process
pollen tube growth	GO:0009860	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10906
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.32|      23|      24|     210|     233|       1
---------------------------------------------------------------------------
  210-  233 (39.11/26.06)	RGSMADRSpYAPRSSTE.DSDFIKS
  237-  260 (34.90/18.01)	RGKPVNRS.YGDLSVAEsDISFVSS
  262-  275 (20.31/ 7.55)	RPS.SDRT..FPISS...DS.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.39|      19|      23|     294|     313|       2
---------------------------------------------------------------------------
  294-  313 (30.78/23.56)	FSAPRLSNSSETDSRlSFGS
  315-  333 (33.61/20.76)	FSATRLSEVNAFSSN.SFDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.17|      32|      47|     366|     412|       3
---------------------------------------------------------------------------
  371-  410 (38.74/56.19)	SAkhkALELHRWKVEEEQRleeaRL.AEEAALAIAEkEKAK
  416-  448 (48.43/22.10)	EA...AEEAQRIAEREAQR....RItAERRALKEAE.EKKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10906 with Med32 domain of Kingdom Viridiplantae
Unable to open file!