<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10902

Description U-box domain-containing protein 32
SequenceMSGEFGVIKVEGICDGENTVFVAVGKNVKEGKSILSWALKSFSVRRICILHVHPSNHLHKVANIQNIEHCSLLQIQGGKVWLEMNNVEKGIIHIIEQHKIQWLVMGAAAETHYSKQLSELKSSKAKFVCQHAPIHCQIWFTCSSYLIHTRSKNCSHLTSKESLSSPKDNGGTKLHDHADNGYEDLNISEDASTSDDKMVNVEIKGNYSLLRSKNKCETHLHRSTSLPILEEGGFHAKPSSDERSRLEHAMMDAENSKKSAFEESVKRWRAEEDAMEAIHMAEVSYKLSKEEEGRRKEKEEILAKQKEEVERMKIQHDLCLKELQMIQEKKLVLESQITESSYAAQELEEKIIQAVELLISFRKKRDELQIECDNAVKEVNQFRKLVEADTDEHCIKNFFSISFSDIIEATQNFDPTSKIGEGKLGSVYKGIIHNVKVAIKMLPACGSLSDSDFQHKAESLSRVRHPNLVTLMGICSESRSLTYEFLEKGNLEDHLAGRTKSRPLCWQHRIRIAVEICSALIFLHANDPCLVHGNLTLSNILLDAKFISKISDLGVHLLVSHCENSSIDGKFCGKDDPEASDPECIDKGQLTVESDVYSFGIILLRLLTARPASGIVREVKCAWESGNLGSVLDCSAGEWPTERANLLAYLALRCCAEDPLNRPNMLLEVWPTIEPMRDVCTPCPDSNTSSQGSKGQRRIPPHFVCPIFQEVMEDPYIAADGYTYEGDAIKGWLYSGHDTSPMTNLKLDTCDLIPNYALYRAIQEWQQQS
Length769
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.387
Instability index44.47
Isoelectric point5.87
Molecular weight86548.64
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10902
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.64|      41|      43|     162|     202|       1
---------------------------------------------------------------------------
  162-  202 (69.66/50.36)	SLSSPKDNGGTKLHDHA......DNGYEDLNISEDASTSDDKMVNVE
  208-  254 (64.98/46.42)	SLLRSKNKCETHLHRSTslpileEGGFHAKPSSDERSRLEHAMMDAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.21|      19|      19|      66|      84|       2
---------------------------------------------------------------------------
   66-   84 (35.83/18.23)	NIEHCSLLQIQGGKV.WLEM
   86-  105 (30.38/14.58)	NVEKGIIHIIEQHKIqWLVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.19|      17|      19|     370|     388|       3
---------------------------------------------------------------------------
  337-  354 (21.67/13.24)	ItESSYAAQELEE..KIIQA
  370-  388 (24.52/23.81)	I.ECDNAVKEVNQfrKLVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.81|      17|      25|     256|     272|       4
---------------------------------------------------------------------------
  256-  272 (28.86/17.82)	SKKSAFEESVKRWRAEE
  284-  300 (27.96/17.05)	SYKLSKEEEGRRKEKEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10902 with Med32 domain of Kingdom Viridiplantae
Unable to open file!