<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10893

Description U-box domain-containing protein 51
SequenceMEEKDGVVTKVEGLSALNSSTIAVAINGKRKSKYVVSWALDKFVPEGKVCFKLLYVRPCITGVPTPMGNLIPISQVRDDVVAAFRKDVEWQTSEKLHPCKMLCTKRKVLVEVLQLESDDIAKAIAEEVSKLNITKLVIGASCRSIFSRGQSLSSRISDSIPSFCTIYAVSRGKLLSIRPSNSEINGSSWTEDSNTSCSISSSTGHSSSLLTEKSDLDSSSSYSQFRSPSLPMQRFQALSNINHNFPHRRAISNETVHHKNYSLDFGYSEDDVSCCPQRSFLSERNNLASSFRSLVTDFYTTADDQASTSGAPTDLSLRNEADINFELEKLRTELRHTQGMYAVAQTEVLDASRKMNELQKRRLEEEIKLQEISLKEEEAKDLVRKENEEYKAAKREADYVKDCAEREAALRKEAELLALREAKEKDKLENALTDQAHQYQEFTWEEIVSSTSSFAENLKIGMGAYGTVYKCSLRHTTVAVKVLHSKGSDLTKQFQQELKILSKIRHPHLLILLGVCPDRGCLVYEFMENGSLEERLFRKYDTPPIPWFDRYRIAWEVASALAFLHNSKPDPIIHRDLKPANILLDRNFVSKIGDVGLSTMINSDAALSTIYRDTGPVGTLCYIDPEYQRTGMISPKSDVYALGMVLLQLLTAKAAMGLPHIVETAIDKDSLTKILDSKAGEWPLEETKKLAVLALKCTEICRKDRPDLKDEILPALEKLKEVADKARDSASTTRPPPPTYYLCPLLKDVMEEPCVAADGYTYDRKAIETWLKEYDISPMTKLPLPHKNLLPNYALLSAILDWKSRKDGYI
Length810
PositionTail
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.383
Instability index43.20
Isoelectric point6.41
Molecular weight91060.95
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10893
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.54|      23|      34|     561|     583|       1
---------------------------------------------------------------------------
  561-  583 (41.33/28.12)	LAFLHNSKPD.PIIHRDLKPANIL
  597-  620 (35.21/22.88)	LSTMINSDAAlSTIYRDTGPVGTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.21|      32|      38|      70|     106|       2
---------------------------------------------------------------------------
   61-   99 (45.56/40.63)	TGVPTPMgnLIPISQVR.DDVVAAFRKDVewqtsEKLHPC
  100-  134 (40.64/24.21)	KMLCTKRkvLVEVLQLEsDDIAKAIAEEV.....SKLNIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.81|      21|      30|     350|     379|       3
---------------------------------------------------------------------------
  361-  389 (19.44/36.02)	RRLEEEIKlqEISlkEEEAkdlvRKENEE
  394-  416 (31.36/17.54)	KREADYVK..DCA..EREA..alRKEAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.20|      24|      30|     164|     188|       4
---------------------------------------------------------------------------
  164-  188 (37.69/25.92)	CTIyAVSRGKLLSIRPSNSEINGSS
  197-  220 (39.51/22.35)	CSI.SSSTGHSSSLLTEKSDLDSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.59|      10|      42|     451|     460|       5
---------------------------------------------------------------------------
  451-  460 (16.89/13.02)	TSSFAENLKI
  491-  500 (17.70/14.03)	TKQFQQELKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.23|      19|      42|     222|     242|       6
---------------------------------------------------------------------------
  222-  242 (30.78/26.90)	YSQFRSPSLPMQRFqaLSNIN
  267-  285 (36.46/24.73)	YSEDDVSCCPQRSF..LSERN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.19|      20|      30|     308|     329|       7
---------------------------------------------------------------------------
  308-  329 (25.46/23.12)	TSG....APTDLsLRNEADINfELEK
  337-  360 (28.73/15.76)	TQGmyavAQTEV.LDASRKMN.ELQK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10893 with Med32 domain of Kingdom Viridiplantae
Unable to open file!