<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10891

Description Mediator of rna polymerase ii transcription subunit 25
SequenceMVADKQLIVAVEGTAALGPFWHTIVSDYLDKIIRCFFGAESTSQKPSAANVEVSLVMFNAHGSYSACLVQRSGWTRDMDIFFQWLSAIPFSGGGFSDAAVAEGLGEALMMFSSPNGNQSQQNIEGKKHCLLISASNPYPLPTPVYRPQMQKLEQNENTETQTDSRLSDAETVAKAFPQCSVSLSVICPKQLSKLRAVYNAGKRNPRAADPPIDTAKNPNFLVLISENFIEARAAFSRSGMTNLTSNQSPVKMDVSSIPPVSVPPSISNSAANGSVMSRQPISAGNIPPATVKIEPTTVTSMNGPAFSHIPSVRPALQPVPSLQTSSPLSVSQEMASHNENVQEMKPIVSGMTQSLRPVAAAAANVRILNDVAQARQAIAGATSIGLQSMGGTPMLSSMISSGMASSVPSAQTVFSSGQSGVTTVSGSVPLAGSGQNTQNSAPASFTSTAPSMSVNPNISISQPLSNNQGGASMAGQTVPGMCQGNLPGTQMMPSGTGMNQNMLTGLGATGMPSGTGTMMPTPGISQQGQPGMQPVGNSTGANMPLSQQQTPAALPSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLSQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQQLQAQHPQLQQQQLSQQQQHISQLQQQQLSQQQQHISQLQQQPLQQLQQQQPLMQQQQQIHQMQQQQLPQMQQQQQIPQMQQQQQIPQMQQPQQQQPMVGTGVNQAYMQGPARSQLMSQGQVSSQGLPTMPGGGFMN
Length828
PositionUnknown
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.04
Grand average of hydropathy-0.350
Instability index62.40
Isoelectric point9.02
Molecular weight88696.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10891
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.61|      21|      21|     699|     719|       2
---------------------------------------------------------------------------
  682-  697 (31.64/ 7.47)	QIPSQQ..Q.QQQ...QLQAQH
  699-  719 (40.80/11.64)	QLQQQQLSQ.QQQHISQLQQQQ
  722-  742 (34.17/ 8.62)	Q.QQQHISQlQQQPLQQLQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.50|      22|      25|     470|     493|       3
---------------------------------------------------------------------------
  476-  500 (37.33/18.27)	QTVPGMCQGnlPGTQMMPsGTGMNQ
  775-  796 (32.16/10.57)	QQIPQMQQP..QQQQPMV.GTGVNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     458.49|      65|      68|     272|     336|       4
---------------------------------------------------------------------------
  132-  175 (37.34/10.04)	.............I.S.......ASN.....................P...............YPLPTPVYRPQMQKLE.QnenteTQT......DS..R.LSDAETVAkA
  182-  268 (54.24/18.04)	SL...SVICPK.QL.SklravynAGKRNPRAA..D.PPIDTAKN...PnflvlisenfiearaAFS.....RSGMTNLT.S.....NQSpvkmdvSSipP.VSVPPSIS.N
  272-  336 (109.56/44.26)	NG...SVMSRQ.PI.S.......AGNIPPATVKIE.PTTVTSMN..GP...............AFSHIPSVRPALQPVP.S.....LQT......SS..P.LSVSQEMA.S
  338-  400 (59.94/20.75)	NE...NVQEMK.PI.V.......SG....MTQSLR.PVAAAAAN..VR...............ILNDVAQARQAIAGAT.S...igLQS....mgGT..PmLS.S..MI.S
  401-  472 (72.45/26.67)	SGmasSVPSAQ.TVfS.......SGQSGVTTVSGSvPLAGSGQNtqNS...............APASFTSTAPSMSVNP.N.....ISI......SQ..P.LSNNQGGA.S
  504-  553 (72.51/26.71)	TG...........L.G.......ATGMPSGTGTMM.PTPGISQQ..G........................QPGMQPVGnS.....TGA......NM..P.LSQQQTPA.A
  554-  604 (52.45/17.19)	LP...SAQSKYvKV.W.......EGNL.SGQRQGQ.PVFITRLE..GY...............RSASASESLAANWP.P.T.....MQ.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.37|      23|     730|      71|      95|       7
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   71-   95 (42.35/24.84)	RSGWTRDMDIFFQWLSAIPfsGGGF
  804-  826 (44.02/20.46)	RSQLMSQGQVSSQGLPTMP..GGGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.36|      16|      18|     633|     649|       8
---------------------------------------------------------------------------
  630-  646 (24.05/18.59)	AMNQ...HGFLSQLQEKKlC
  647-  665 (20.30/10.30)	AVIQlpsQTLLLSVSDKA.C
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10891 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QLPQMQQQQQIPQMQQQQQIPQMQQPQQQQPMVGTGVNQAYMQGPARSQLMSQGQVSSQGLPTMPGGGFMN
2) SVPPSISNSAANGSVMSRQPISAGNIPPATVKIEPTTVTS
3) SVPSAQTVFSSGQSGVTTVSGSVPLAGSGQNTQNSAPASFTSTAPSMSVNPNISISQPLSNNQGGASMAGQTVPGMCQGNLPGTQMMPSGTGMNQNMLTGLGATGMPSGTGTMMPTPGISQQGQPGMQPVGNSTGANMPLSQQQTPAA
4) VRPALQPVPSLQTSSPLSVSQEMASHNENVQEMKPIVSG
758
261
406
312
828
300
553
350










Molecular Recognition Features






MoRF SequenceStartStop




NANANA