<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10889

Description Pre-mrna-processing protein 40c (Fragment)
SequenceEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKALFEHYVKTRADEERKEKRAAQKAAVEGFKHLLEEAKEDINEDTDYQSFKKKWGHDPRFESLDRKDREVLLNERVLQLRKAAQEKAYAVRAAAISQFKSMLREREDITLNTRWSKVKDSLRDDPRYKSVKHEDREALFNEYQSELKAAEQEVARIAKAKHDEEEKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFREHVKILYERSAQEFKALLAEVLTAEACSRETEDGKTVANSWSTAKQLLKADPRYSKMPRKDRESLWRRYVEDIQRRQKSALDEGDKARSKGSSGSRKR
Length380
PositionUnknown
OrganismNicotiana attenuata (Coyote tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-1.204
Instability index44.82
Isoelectric point9.47
Molecular weight44786.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10889
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     405.45|      65|      66|      57|     121|       1
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   13-   72 (52.76/23.44)	................KWEKelpkivfDPRFKA....IPSySARKALFEHYV.KT.RADEERkekrAAQKAAV.EG.FKHLLEE
   73-  140 (96.88/48.92)	AKEDINEDTDYQSFKKKWGH.......DPRFES....LDR.KDREVLLNERVLQL.RKAAQE.kayAVRAAAI.SQ.FKSMLRE
  141-  198 (75.88/36.79)	.REDITLNTRWSKVKDSLRD.......DPRYKS....VKH.EDREALFNEYQSEL.KAAEQE.varIA.KA.......KH...D
  199-  243 (49.66/21.65)	EEEKLKE.RERALRKRKERE.......EQEVER....VRS.KAR............RKEA.............vES.YQALLVE
  244-  302 (63.60/29.70)	IIKD..PQASWTESKPKLEK.......DPQGRAanphLDQ.SDLEKLFREHVKILyERSAQ...............eFKALLAE
  306-  373 (66.68/31.48)	AEACSRETEDGKTVANSWSTakqllkaDPRYSK....MPR.KDRESLWRRYVEDI.QR.RQKsaldEGDKARS.KG........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10889 with Med35 domain of Kingdom Viridiplantae
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