Description | Pre-mRNA-processing protein 40B |
Sequence | MANNHQYPGIQPFQHPNASSIDLPRGFAPPMNFQNFQCVGRGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIASGTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYEGSRVPPQVTGPSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAFLKPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPTGLPSQTSTSEGVEKLTLTSDLKQPASVPGSSSPVENVDRVQMSADETSQLCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKPMVESEKVESQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLLKEQSNRIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKYNHDMNEPHGKERRRSGRDSHNRHRERHTSVKENDTDHFKESHKAGGGHKKSRHQRGWVSEAEVEGKEKRRRKEEAREHTKEEELEDGECGRY |
Length | 973 |
Position | Unknown |
Organism | Arabidopsis thaliana (Mouse-ear cress) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.027 |
Instability index | 47.56 |
Isoelectric point | 6.46 |
Molecular weight | 111485.10 |
Publications | PubMed=11130713 PubMed=17272265 PubMed=27862469 |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP10840 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 161.72| 39| 39| 188| 226| 1 --------------------------------------------------------------------------- 177- 217 (70.74/44.40) FLKPLPSQKalTDWVEHTSADGRKYFFNKRTKKSTWEKPVE 218- 258 (69.95/43.81) LMTLFERADarTDWKEHSSPDGRKYYYNKITKQSTWTMPEE 438- 455 (21.03/ 7.87) FKSLLKSAKvgSDW....................TWEQ... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 424.27| 63| 65| 495| 557| 2 --------------------------------------------------------------------------- 495- 557 (103.35/64.76) LAR.QK........KLYEDFKRMLE.ECV...ELTPSTRWSKTVTMFEDDERFKALEREKD...R...RNIFEDHVSEL....KEK 563- 628 (80.29/48.51) LED.RK........RNIIEYKRFLE.SCN...FIKPNSQWRKVQDRLEVDERCSRLEK.ID...Q...LEIFQEYLRDLereeEEK 629- 703 (60.11/34.31) KKI.QKeelkkverKHRDEFHGLLD.EHIatgELTAKTIWRDYLMKVKDLPVYSAIASNSSgatP...KDLFEDAVEDL....K.. 705- 765 (61.52/35.30) ..R.DH........ELKSQIKDVLKlRKV...NLSAGSTFDEFKVSISEDIGF.PLIPDVR...L...KLVFDDLLERA....KEK 769- 832 (84.76/51.66) EARkQT........RQTEKLVDMLR.SFK...DITASSSWEELKHLVEGSEKCSTIGDESF...R...KRCFEDYVSLL....KEQ 836- 872 (34.24/16.10) IKQ.NK........KVPED........................VREEHDKGRDK.YGREKD...RvreRD.SDDH........... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 153.93| 45| 55| 873| 919| 3 --------------------------------------------------------------------------- 873- 919 (76.37/50.68) HKKGAAGKYNHDMNEPHGKERRRsgRDSHNRHRERHTSVKENDTDHF 929- 973 (77.56/45.49) HKKSRHQRGWVSEAEVEGKEKRR..RKEEAREHTKEEELEDGECGRY --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 130.74| 27| 55| 24| 50| 5 --------------------------------------------------------------------------- 24- 50 (49.32/35.64) PRGFAPPMNFQNFQCVGRGGTVLS...IGY 52- 80 (38.92/26.43) PQSYAPQL.LQSMHHSHERPSQLNqvqVQH 82- 106 (42.50/29.60) PLG..PPTLISQPNVSIASGTSLH...QPY --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 117.58| 28| 28| 305| 332| 6 --------------------------------------------------------------------------- 288- 315 (42.47/27.56) RSDTASTAAPTGLPSQT...STSEGVEKLTL 316- 340 (39.86/25.37) TSDLKQPASVPGSSSPV...E...NVDRVQM 345- 375 (35.25/21.51) TSQLCDTSETDGLSVPVtetSAATLVEKDEI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.18| 14| 30| 128| 144| 7 --------------------------------------------------------------------------- 128- 144 (21.07/23.90) SAtsyEGSRVPPQVTGP 160- 173 (26.12/17.86) SA...ESSIMNPTFEQP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KYYYNKI 2) RHQRGWVSEAEV | 241 933 | 247 944 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab