<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10834

Description Uncharacterized protein
SequenceDKVKQRLQPQVPISLPGINEDNKTLKTKNACTQQQAINKTSGGIGSNCNDSGNSEYMVKTSQEGLKLTINKTSSSTTTSKLSSSLTSSSSSSCSSTFPSSTSSSSSKSVLKSKQGLGSPSSYHGSSSLALNKKIHTGLKPGVSSGPASKKPSSPTLYKSSSSSSLGSSSKHMFQKSYSSGSLSTKLGSGSSNSSSSAYGLSKSHSTNSFGEYRSRTSKKSHSASTSPALQTPYTSSTNSQSQPASRLDHQADMLKILQYASPTMAASMEGFMKGLNSKFQIPKLSQRNSNSASGSSTNNNTSSTASTSTTSTTTTTIIAINPSDKKLPSCPTTQNQPAHSKHHTQSSISTLSTNVNQGTPTSSSSSLSSSKSVPAFESSAPSKSTSLDFLNTATKSSVNPTHIGDDAMRGTSAATTAPPSLTSK
Length424
PositionMiddle
OrganismStomoxys calcitrans (Stable fly) (Conops calcitrans)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Muscoidea> Muscidae> Stomoxys.
Aromaticity0.04
Grand average of hydropathy-0.721
Instability index57.54
Isoelectric point10.01
Molecular weight43741.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10834
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.01|      27|      30|     167|     195|       2
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  167-  195 (41.37/15.29)	SSSKHMFQKSYSsgSLSTKLGSGSSNSSS
  338-  364 (38.64/ 9.97)	AHSKHHTQSSIS..TLSTNVNQGTPTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.33|      22|      68|     218|     241|       4
---------------------------------------------------------------------------
  225-  252 (24.24/11.34)	TSPALQtpYTSSTNSQSqpasRLDHQAD
  253-  274 (26.09/ 6.74)	MLKILQ..YASPTMAAS....MEGFMKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.94|      32|      90|     275|     313|       6
---------------------------------------------------------------------------
   18-   61 (42.54/11.36)	INEDNK..TLKTKNActqqqaiNKTSGGIGSNCNDSGNSeymvkTS
  275-  308 (47.40/18.63)	LNSKFQipKLSQRNS.......NSASGSSTNNNTSSTAS.....TS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10834 with Med1 domain of Kingdom Metazoa
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