<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10828

Description Uncharacterized protein
SequenceMEVQILDYVNNYLKVETIEEAFLSVIVYHPNGENDRATSFTNDIIKAFSNVPQDNKENIVRQYLQKAATVTNANHLKVLMATLGKLTEAHLLTSKLLCDKILLCEKLNYENKLFWIESFHLIKKVIDHVDYKGVREIMKSCRDKAQTFPLNVNVTYLPQLLALEDTIRYIFDRENCLLPAYFIANEFMKPFPYHWKLNKLMTDVVEEFRQTAQMVSIIGHTHMLPIVEHFGYADHMMNSWKLDPNTLKFNFKGILPYELELMEEQPQLLRYVLGQSYSKEMVSVMLNLQKHQKQRCNTLEDQLVNLIINAMEMTESNENAAGSGFNVPEEQISQNEWIWLHLSCQLIYFVLFQFVSFMHIIIALYEKLSKKELRKGRDQLMWILLQFISGSIQKNPITNFFPMFKLFDLLYPEQEPLKLPDCNKSSCLRQMAPICIWIHLMKKARAENMNISRPLPVALKNHHDFLQHLVMPNTMMTMSLGNDFRIVLICNAYSTNQEYFTRPMNILIEGLTGNVKTATGAPLQPVPFSMVVLDSLTVHSKMSLIHGFVSQMIKQAQSKTTVPTPALVETYARLLVYTEIESLGIKGFLTQLLPSVFKHQAWGILHTLLEMFSYRLHHIPTHYRVQLLSHLHSLAPMPQTNKMQLNLCFESTALRLINGLGSVEFQPQLSRYFNEKSPASVASAESEELNRVLILTLARSMHITASGDDMQAWCKELLSTIMQNTPHSWASHSLACFPPALAEFFAQNNHPVENKQLLKKSVEEEYRTWTSMSNENDIISHFIKPNTSPLFLCLLYKMIWETENISPVAYKILEGISARALSANLRKLCDYLVSEVVSSNGKEFIHKCVDSINNMIWKYNVVTIDRVVLCLALRTQEGNEAQVCFLIIQLLLLKASELRNRVTDFCKENNPDHWKQNNWHEKHLSFHQKYPEKFAPDESASHPPLPVYFSNMCLRFLPVLDVVIHRFIELPIQHVHQILEVILEHLSILYKFHDRPISYLYNTLHFYERILRERPSLKKKLVSAVTGSFCDIRPANWCVSEQYKLYLQSPDLLWNPELSYYMKLITRLAETISGKNVFFNTDWRFNEFSNAPAHAMYVTCVELLSLPIAPHIVANNIIDVVVKGYALIPQKEIHTYLNAVGIVLAELPEAYWSGIYDRLQEVLNSPKMLRWSYRFNAFEMFNFKMVREAMVEKTYAVVLAVAHSVFHHMGGFKLATMTRYIKEKLKPCVRTEHQLIFLCHVFGPFLQRIEQEKPNAVAGIAILLYEMLEVVDKQHGPAPLEYMDPICDFLYHIKYIHVGNIIKNESEAIIKRLRPTLQKRLRFISHLNIEDKHLDKVNENSLNPALQPSTTTSTAFANNPIQQNFANLPNQQQQQQQQQQQQQQQLTQMNQPMQQMQFQLQQQQLHHLQQQQQLQQQSQPPNMGGPMRHN
Length1430
PositionTail
OrganismStomoxys calcitrans (Stable fly) (Conops calcitrans)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Muscoidea> Muscidae> Stomoxys.
Aromaticity0.10
Grand average of hydropathy-0.173
Instability index46.55
Isoelectric point7.62
Molecular weight165980.82
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10828
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.91|      19|      23|    1362|    1380|       1
---------------------------------------------------------------------------
 1362- 1380 (38.81/21.02)	QQNFA..NLPNQQQQ.QQQQQQ
 1383- 1404 (29.10/14.04)	QQQLTqmNQPMQQMQfQLQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.90|      19|      23|     593|     611|       2
---------------------------------------------------------------------------
  593-  611 (35.09/18.25)	LPSVFKHQAWGILHTLLEM
  619-  637 (34.81/18.05)	IPTHYRVQLLSHLHSLAPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.73|      37|      37|     515|     551|       3
---------------------------------------------------------------------------
  515-  551 (63.14/50.80)	VKTATGAPLQPVPFSMVVLDSLTVHSKM.SL.IHGFVSQ
  553-  591 (51.59/39.90)	IKQAQSKTTVPTPALVETYARLLVYTEIeSLgIKGFLTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.63|      35|      37|     715|     751|       4
---------------------------------------------------------------------------
  715-  751 (57.88/39.80)	KELLSTIMQNTPHSWASHSLAcfPPALAEFFAQNNHP
  755-  789 (60.74/34.65)	KQLLKKSVEEEYRTWTSMSNE..NDIISHFIKPNTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     362.78|     112|     579|     300|     417|       5
---------------------------------------------------------------------------
  300-  417 (179.70/132.32)	EDQLVNLIINAMEMTESNENAAGSGF...NVPeEQISQNEWIWLHLSCQLIYFVLFQF.VSFMHIIIALYekLSKKELRkGRDQLMWILLQFISGSIQK.NPITNFfpMFKLFDLLYP.EQEPL
  880-  997 (183.08/114.60)	EAQVCFLIIQLLLLKASELRNRVTDFckeNNP.DHWKQNNWHEKHLSFHQKYPEKFAPdESASHPPLPVY..FSNMCLR.FLPVLDVVIHRFIELPIQHvHQILEV..ILEHLSILYKfHDRPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.90|      12|      16|    1152|    1167|       6
---------------------------------------------------------------------------
 1152- 1164 (18.13/20.01)	WSGIYDRLqEVLN
 1171- 1182 (24.77/10.21)	WSYRFNAF.EMFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10828 with Med23 domain of Kingdom Metazoa
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