<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10806

Description Uncharacterized protein
SequenceMDETLADVVFLVEGTSANGAYINELKTNYIVPTLEHFSQGPIEDREYLISDQRYSTQYCVVVYRTTANLLEPVCTTYGPYASPQKVLDLFERLPLIGGGMESCANLAEGFATAHVCFEDMKEHRTGMSMDLNLNSQKHCILMCNSPPYSMPVMDCWKYSGKTVEQLAGLFNERKINLSIVAPRKIPVLFKIFMKADGDQPLAAKNYAKNIRHLVLLKGYHLKERPQSPNSAAMANQTNQVGMPNQVVQQQQQQQQPQTNVQQQQNQQNAGMPMDNSSHAPTQQQQQQQQQSMQQQVAQMGGLNPNQQPGNPLNQQMLQQQQFNQNANFQGQGNRWVFNPNQQQQQQQQQPQTRPQFIGGPNVPGGPMVSPMGGVNQGMPGQNSALISQLSAPPNQNVNPMLQQQQQQIRMQLLSQQQQQMQMQQQQQQQQQQQNVMNPNMSVGGPGPNPQQQQMSVPNNQPNTSMGNQQNQVQKPPDQAVMRDTIWSGTLEWVEKSKPDQQKITRTLKCIVTANIKDGEPEIKAVNWPSKLLMQLMPKHLVGNIGGQFLKDSKMVVFKPQPSEALDALAKNMTTVFAGCVHFTTPANTPPCEIKVLILLYTAEKNAYLGFIPNNQSMFVERLRKAIQQKQSMGMQQTAAGGGPPNNMQQQQQQQQQQQQQQQQQQQSNHGLQQQQQQQQQQNQQQMQMGNPMNAMGPNTMNPQQQQDPSQQQHQFNQYNPQQQQMSMQMAGGPMNQQMMPGPPMAGGPDQMVGNNPMQQQMSMMQHQQRMPMMPGGNPNNPQQQQMRMVRPMMSNNSGLRHLLQQQTTPGQQFRPQMGGGGGPGVVPGMGGGMPNPGQMTGGPGGPNRPFDDNNFDFM
Length858
PositionUnknown
OrganismStomoxys calcitrans (Stable fly) (Conops calcitrans)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Muscoidea> Muscidae> Stomoxys.
Aromaticity0.05
Grand average of hydropathy-0.889
Instability index57.86
Isoelectric point8.84
Molecular weight96023.60
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10806
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     758.66|     115|     245|     376|     490|       1
---------------------------------------------------------------------------
  241-  310 (95.39/17.63)	G.M...........................PNQVV..Q.Q.........QQ...QQQQPQTNVQ......QQQNQQnagMPMDN.......sshaptQQQQQQQQQS.MQQQV.AQMG.....G.........L...NP........NQQP....................G....N............................
  311-  376 (81.03/13.45)	.......................................P...lnqqMLQQ...QQFNQNANFQ......GQGNRW...VFNPN.............QQQQQQQQQPQTRPQF...IG.....G.........P...N.......VPGG.P...............MVSpMG....G.VNQ........................
  377-  495 (223.20/54.82)	G.MPGQN..........SALISQLSA...PPNQNV..N.P.......MLQQ...QQQQIRMQLL......SQQQQQ...MQMQQ.............QQQQQQQQQNVMNPNM.SVGGP....G.........P...NPQQQQMSVPNNQP...............NTS.MG....NQQNQVQKPPDQAVMRDTIWSGTLewveK
  496-  628 (92.77/16.87)	S.KPDQQkitrtlkcivTANIKD.GE...PEIKAV..NwPskllmqlMPKH...LVGNIGGQFL......KDSK.......MVV.............FKPQPSEALDALAKNM.TTVFA....G.........C.......VHFTTPANTPpceikvlillytaekNAY.LGfipnNQSMFVER.LRKAIQQ.............
  629-  736 (159.15/36.18)	.....KQ..........SMGMQQTAAgggPPN.NM..Q.Q.......QQQQ...QQQQQQQQ........QQQQQS...NHGLQ.............QQQQQQQQQN..QQQM.QMGNPmnamG.........PntmNPQQQQ.D.PSQQQ.........................HQFNQYN..PQQQQMSMQMAGGPM...nQ
  737-  851 (107.12/21.04)	QmMPGPP..........MA......G...GPDQMVgnN.P.......MQQQmsmMQHQQRMPMMpggnpnNPQQQQ...MRMVRpmmsnnsglrhllQQQTTPGQQ..FRPQMgGGGGP....GvvpgmgggmP...NPGQ..MTGGPGGP...............N................RPFD..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.95|      14|      26|     187|     200|       2
---------------------------------------------------------------------------
  187-  200 (25.48/15.72)	VLFKIF.MKADGDQP
  214-  228 (20.47/11.04)	VLLKGYhLKERPQSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10806 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KGYHLKERPQSPNSAAMANQTNQVGMPNQVVQQQQQQQQPQTNVQQQQNQQNAGMPMDNSSHAPTQQQQQQQQQSMQQQVAQMGGLNPNQQPGNPLNQQMLQQQQFNQNANFQGQGNRWVFNPNQQQQQQQQQPQTRPQFIGGPNVPGGPMVSPMGGVNQGMPGQNSALISQLSAPPNQNVNPMLQQQQQQIRMQLLSQQQQQMQMQQQQQQQQQQQNVMNPNMSVGGPGPNPQQQQMSVPNNQPNTSMGNQQNQVQKPPDQAVMRDTIWSGTLEWVEKSKP
2) VERLRKAIQQKQSMGMQQTAAGGGPPNNMQQQQQQQQQQQQQQQQQQQSNHGLQQQQQQQQQQNQQQMQMGNPMNAMGPNTMNPQQQQDPSQQQHQFNQYNPQQQQMSMQMAGGPMNQQMMPGPPMAGGPDQMVGNNPMQQQMSMMQHQQRMPMMPGGNPNNPQQQQMRMVRPMMSNNSGLRHLLQQQTTPGQQFRPQMGGGGGPGVVPGMGGGMPNPGQMTGGPGGPNRPFDDNNFDFM
217
619
498
858










Molecular Recognition Features






MoRF SequenceStartStop




NANANA