<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10756

Description Uncharacterized protein
SequenceNHEFQNLPDQLVSIRCSLRGHVIESIPFSSPAVLSQVSTLIRQQFVLNQLLASCLQLTTHRANLEPGVTCFELEVLGPTDCRVAIMRGLGFKMHSLHLRSPDCSPACRRLKPPSSASADSAKPEIGDSGAGTAEPSAQFLGRALRTSGLSLPLAVRRLQRLRGRPRGCQRRRRLIDSPSAPQSLRRVASTSALAAIASGLVEVKGVVASVAASAASLLPARPRFCLEAPAPRPKRQPLGPPAPVEFQPPPPPMPMPPNFAGGHHPLQQPQFGPQFSRQLSHPAGADGGGHHHPLPHHHMPQFQHPQGYMPGHQQHQLYQQQLVGGQATPPHHLCRQGPPHLAGYHPHQRMPHGHGYPPPPPHSQTPPYGVQFRPGAQPGGPYYQGPPSQQQQQQQPPPHHSPSPYHSQFAGPPGYGPQPATPAGYAQQMPPASPHHLMLGSPAPHLQQPQTPQPHTPHTPQPLHHPPSTPAASNMEISGPGTPLDQQLMSHHLGDSSGGSGSGFPPHTPMDKSNQNPVLISLLQEDSTSCGTPVPAQQMPMQHHGQQQHRQMFPHGAPPPAYGQQQQAVYSRNPAAGQRALPPQPQMTSPQHQQQQQQLLDPAASSSSVGGAGVRAGNSGGAKKPRKPRRREQQQQSLRLTIPKTKLGPQDHQAQKNPESVYDFDPAKEEATKASSVEARNKPLKVTIRMNPASSAAATAEASSGNNGRAMSAGLNPASAAGSAMPAAGPGAAIYGPPAAKKSRLHADKAKKSKKHRRLDASVDSAHLSTPSSSAGASPATPADASSAASAPASGSRQSSALKSYKIPRKNTASEDAASSALQQQQQQQPPPPPQQQPPPHPLPPRFQQAASFAPAGGIRQQLYQQRHPAYPAP
Length874
PositionMiddle
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.04
Grand average of hydropathy-0.762
Instability index75.13
Isoelectric point10.22
Molecular weight92902.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10756
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     907.95|     195|     199|     219|     414|       1
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   98-  216 (129.76/16.53)	.......................................................LRSPDCSPACRRLKPPSS.........ASADSAKPEIGDSG..AGT.AEP...SAQ......F.....LG.............RAL.R.........TSGLSLPLA...VRRLQRLRGRPRGCQR........RRRLID.SPSAP.QSLRRvASTSALAAIASGLVE.VKGVVASVAA.SAAS.................
  219-  379 (300.30/50.04)	.........................................PARPR.F......CLEAPAPRPKRQPLGPPAP.........VEFQPPPPPMPMPPNFAGG.HHPLQ.QPQ......FGP..QFS.............RQL.S...HPAGADGGGHHHPLPhHHMPQFQHPQGYMPGHQQH....QLYQQQLVG.GQATPPHHLCR.QGPPHLAGYHPHQRM.PHGHGYPPPP.PHSQTPPYGVQFRPG..AQPG
  380-  583 (274.79/43.92)	GPYYQGPPSQQQQQQQPPPHHSPSPYHSQ..FAGPPGygpqPATPAgY......AQQMPPASPHHLMLGSPAP..........HLQQPQTPQPHTPHTPQPlHHPPS.TPAasnmeiSGPgtPLD.............QQLmS...HHLGDSSGGSGSGFP.PHTP........MDKSNQNpvliSLLQEDSTScGTPVP....AQ.QMPMQHHGQQQHRQMfPH..GAPPPAyGQQQQAVYSRNPAAGqrALPP
  584-  780 (203.09/30.38)	QPQMTSPQHQQQQQQLLDPAASSSSVGGAgvRAGNSGgakkPRKPR.RreqqqqSLRLTIPKTK...LGPQDHqaqknpesvYDFDPAKEEATKASSVEAR.NKPLKvTIR......MNP..ASSaaataeassgnngRAM.SaglNPASAAGSA.........MPA.AGPGAAIYGP.....................PAAKKSR.LHADKAKKSKKHRRL.DAS....VDS.AHLSTPSSS....AG..ASPA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.90|      34|      36|     797|     831|       2
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  797-  831 (53.81/20.71)	RQSSALKSYKiPRKNTASEDAASSALQQQ..QQQQP..P
  835-  872 (57.09/19.42)	QQQPPPHPLP.PRFQQAASFAPAGGIRQQlyQQRHPayP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10756 with Med4 domain of Kingdom Metazoa
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