<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10748

Description Uncharacterized protein
SequenceMLTLEKIFASLPKTERGKAIVLGGDPKGENFLYVNGNSVFIRSLKDPFTKCDVYTQHSTATGVAKYSPSGFYIASGDASGKVRIWDTTQAEHVLKNEFHVLGGAIRDLAWTSDNQRLIIVGEGREKFGVAILADSGASVGEIIGHSKAINSVDFKPQRPFRAVTASEDFVVCFYEGPPFKFKKQNDEHTNFVNVVRYAPSGELFASAGSTGRILLHEGKTSEYLGEIGDPAHKGGIYSLAFSPNSDRLLSVSGDKTARLWNVQDKSLIGEWSFGNTINDMQVSCLWCNDYVITVSLDGSLNFLDLANPGKPTEVIGGHSKPITALDRSADGRTLVTGSTDASLVIWDSASGRMRRVTGLAHKNQIQALAVDASGTVYSVSSSADAAVRADSPAPRKLDSQPVDASAAADLVAIACRQHLVLLRSPGAVVATVAASALTCCALSPDGATLAVGGADAKAPIRLLSTPQLAEIQSVAEHQAEVTALAYSPDGANLAAGFADRYVRVYSVANGYGLANTEEWCFHTARVNCLAWTHDSKYLATGSLDCSIIVWSLDSPRKRIVAKNAHPMSQITKLTWIDANHLVSTGQDSNIKVWNVSFD
Length598
PositionTail
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.08
Grand average of hydropathy-0.078
Instability index25.09
Isoelectric point6.32
Molecular weight63969.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10748
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     219.08|      41|      42|     421|     461|       1
---------------------------------------------------------------------------
   66-   85 (21.24/ 6.78)	........................YSPSGFYIASGDASGKVRIW
  358-  396 (52.81/26.86)	GLAHKN.QIQALAV..DASGTVYSVS.SSADAAV.RADSPAPRK
  421-  461 (67.32/36.09)	LLRSPG.AVVATVA..ASALTCCALSPDGATLAVGGADAKAPIR
  462-  499 (41.90/19.92)	LLSTPQlAEIQSVAehQAEVTALAYSPDGANLAAGFAD......
  524-  550 (35.82/16.05)	.................ARVNCLAWTHDSKYLATGSLDCSIIVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     293.02|      84|     128|     103|     210|       2
---------------------------------------------------------------------------
  103-  167 (85.10/53.94)	........................GAIRDL....AWTSDnqrLIIVGEGREKFGVAI.....LADSGAS...VGEI..IGHSKAINSVDFKPQRPFRAVTASE
  185-  252 (69.32/75.60)	NDEHTNFVNVVRYAPSGELfaSAG.................................stgriLLHEGKTseyLGEIgdPAHKGGIYSLAFSPNSD.RLLSVS.
  253-  339 (138.60/82.27)	GDKTARLWNVQDKSLIGEW..SFGNTINDMqvscLWCND...YVITVSLDGSLNFLD.....LANPGKP...TEVI..GGHSKPITALD.RSADGRTLVTGST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10748 with Med16 domain of Kingdom Metazoa
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