<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10736

Description Uncharacterized protein
SequenceKLPRNSARSLPTPPGISAEAAAHASSLVQSLTLRLYRSGQYQPPVNFRVPPPRASLVALVREWRLSGCPLDPPERRVRTCPPCVHLGVNELGPSSRCAEAVGSVQSEWQQLCHLVQMCLPLTRRSNWPPDTCLVSFGFPGLRIAYGPVRDEEGVPVWEMHMIQKAAAGQKPDIYINFVSRRPSAPNPHFPVREQLSKDFLRHHSVLHLLRQLASSYRALAPLACLAGGWHISPQLTCCRQTVLLAHPYRLQLEHRGRVTLSVRLDADNCVRLASPQLTPLQLIRLHPAARIDSDQSVALPAADWADLRPYHWLACACQFLALCQSCERQQQQRHELLDDGCLLTLRTERLGCLNVRLCLEGVLCHVDAGEPALATFVQRLLFHPPYRWQAVASLQALLCSPGALRACLCLEDPRLLPPPNKPLLTQLQLLTVKDYPSTQFYRLGMPAVGIYLLHDQRPELYFSLLLTDSESRRCLSIMILYDELKNDAKLFNPFAASGGGGLIAAALMRLDAEAIKPVQTACSGEGRECSLPHLFRAIASGRWIQ
Length545
PositionTail
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.07
Grand average of hydropathy-0.071
Instability index61.01
Isoelectric point8.86
Molecular weight60683.84
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10736
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.45|      14|      40|     232|     247|       1
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  232-  247 (21.13/17.97)	SPQLTCCrQTVLLaHP
  274-  287 (27.32/13.29)	SPQLTPL.QLIRL.HP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.46|      15|      74|     309|     323|       2
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  309-  323 (34.34/18.25)	PYHWLACACQFLALC
  385-  399 (29.12/14.40)	PYRWQAVASLQALLC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.66|      26|      42|      45|      70|       3
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   45-   70 (47.63/25.78)	VNFRVP.PPRASL..............VAL.VR.EWRLSGCPL
   75-  114 (31.50/14.46)	RRVRTC.PPCVHLgvnelgpssrcaeaVGS.VQsEWQ.QLCHL
  121-  147 (28.53/12.38)	LTRRSNwPPDTCL..............VSFgFP.GLRIAYGP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.68|      10|      28|     263|     272|       4
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  263-  272 (18.63/11.76)	RLDADNCVRL
  290-  299 (17.05/10.19)	RIDSDQSVAL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.31|      29|      48|     351|     381|       5
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  351-  381 (47.51/31.13)	GCLNVRLCLEGVLCHVDAGEPALATFvqRLL
  402-  430 (52.80/29.14)	GALRACLCLEDPRLLPPPNKPLLTQL..QLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.82|      24|     325|     190|     214|       6
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  190-  214 (37.70/27.67)	PVREQLSKDfLRHHSVLHLLRQLAS
  517-  540 (45.13/28.20)	PVQTACSGE.GRECSLPHLFRAIAS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.59|      25|     289|     153|     181|       7
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  153-  181 (42.97/39.04)	GVPVWEMHMIQkaaaGQKPDIYINFV.....SRR
  444-  473 (39.62/26.34)	GMPAVGIYLLH....DQRPELYFSLLltdseSRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10736 with Med14 domain of Kingdom Metazoa
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