<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10723

Description Uncharacterized protein
SequenceNHEFQNLPDQLVSIRCSLRGHVIESIPFSSPAVLSQVSTLIRQQFVLNQLLASCLQLTTHRANLEPGVTCFELEVLGPTDCRVAIMRGLGFKMRSPACRRLKPPSSASADSAEPEIGDSGAGTAEPSAQFLGRALRTSGLSLPLAVRRLQRLRGRPRGCQRRRRLIDSPSAPQSLRRVASTSALAAIASGLVEVKGVVASVAASAASLLPARPRFCLEAPAPRPKRQPLGPPAPVEFQPPPPPMPMPPNFAGGHHPLQQPQFGPQFSRQLSHPAGADGGGHHHPLPHHHMPQFQHPQGYMPGHQQHQLYQQQLVGGQATPPHHLCRQGPPHLAGYHPHQRMPHGHGYPPPPPHSQTPPYGVQFRPGAQPGGPYYQGPPSQQQQQQQPPPHHSPSPYHSQFAGPPGYGPQPATPAGYAQQMPPASPHHSMLGSPAPHLQQPQTPQPHTPHTPQPLHHPPSTPAASNMEISGPGTPLDQQLMSHHLGDSSGGSGSGFPPHTPWTRATRIPLLQEDSTSCGTPVPAQQMPMQHHGQQQHRQMFPHGAPPPAYGQQQQAVYSRNPAAGQRALPPQPQMTSPQHQQQQQQLLDPAASSSSVGGAGVRAGNSGGAKKPRKPRRSNPSSAGAASATTPTAPSSSAGNNGRAMSAGLNPASAAGSAMPAAGPGAAIYGPPAAKKSRLHADKAKKSKKHRRLDASVDSAHLSTPSSSAGASPATPADASSAASAPASGSRQSSALKSYKIPRKNTASEDAASSALQQQQQQQPPPPPQQQPPPHPLPPRFQQAASFAPAGGIRQQLYQQRHPAYPAP
Length808
PositionMiddle
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.04
Grand average of hydropathy-0.740
Instability index75.90
Isoelectric point10.54
Molecular weight85283.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10723
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     935.28|     189|     195|     280|     474|       2
---------------------------------------------------------------------------
   95-  208 (138.27/21.13)	SPACRRLKPPSSA.SADSAEPEIGDSGAGTAE........PSAQFLGRALRTSGLSL.......................................PL.AVRR..LQRLRGRPRG.CQR...R....RRLI.DSPSAPQ.........SL.......RRvASTSALA.................................................................................................aiasglvevkgvvAS..VAA......SAASL
  209-  420 (323.71/68.98)	LPARPRFC.LEAP.AP...RPKR.QPLGP..PAPVEfQ..PPP...........PPMPmppnfagghhplqqpqfgpqfsrqlshpagadggghhhPLPHHHMPQFQHPQGYMPG.HQQ...HQLYQQQLVGGQATPPH.........HL.......CR.QGPPHLAGYHPHQRMP.HGHGYPPPP...PHSQTPP....YGVQFR......PGA.Q...PGGPYYQGPPSQQQQQQQPPP..HHSPSPYHSQfaGPPGYGPQP.............AT..PAG......YAQQM
  421-  611 (234.36/43.52)	PPASPHHSMLGSP.APHLQQPQTPQPHTPHTPQPLH.H..PPSTPAASNMEISGPGTP.........................................................lDQQlmsHHLGDSSGGSGSGFPPHtpwtratriPLlqedstsC...GTP.....VPAQQMPmQHHGQQQHRqmfPHGAPPP...aYGQQQQavysrnPAAgQralPPQPQMTSPQHQQQQQQLLDP..AASSSSV.....G..GAGVR..............AG..NSG......GAKK.
  612-  801 (238.94/44.59)	.PRKPRRSNPSSAgAASATTPTAPSSSAGNNGRAMS.AglNPASAAGSAMPAAGPGAA...................................iygP.PAAKKSRL.HADKA.KK.SKK...H....RRL..DASVDSA.........HL..........STPSSSAGASPATPAD.ASSAASAPA...SGSRQSSalksYKI.........PRK.N...TASEDAASSALQQQQQQQPPPppQQQPPP.HPL...PPRF.QQA.............ASfaPAGgirqqlY.QQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10723 with Med1 domain of Kingdom Metazoa
Unable to open file!