<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10715

Description Uncharacterized protein
SequenceEDRKRAVKLYISHVMEEFLDRVHICDELLVSHDDIMRNPAFFKEAVTVMDRLVRQMDYKGCRDLFGKVLGLYKTFSEGEDKVFVPAFKILKTKLETFRNSFKNVANMFSHRVIRQIVPIAGVGNYCMPPAILQHPQPSSVTNVPVNLLASTGALDLKGPLPYARCLQRPHTSLIRAVLTQQGSMDLLLSLLSLHTAPRASKISRCLFLERCLIDTILWTADETEACESDSEMAWADMMWRHLGLYSIHLCRLHLVRFPEMCLGVLEGLQDRRDSLSRSAPHIAWMLFNFLGAQNKNPLVDFAPILRILDALFPGGAPAFDTTLLVWFSLTQKSSAPNERLPRALPPPMQPMMSELMEKFQQMSQSPSYQVPLDPEEFRWFAYVYNAYAPLGQPQVVSPLNSKLVEALKQSDAIAPSYSSLRQLATMSLLAINSLLYNLLSTHADSPVVLDTYARITVLMHHDLNLQPKSVLTEAFTKAGNTGGSRVLAFVFELATYHLNSVEPMQRHLLLQNLVTLAKANRLGLDTELCLYRQAQALLTPALQVTNNHVKKLYVAWICGSDQEELNKYLLLQINHQLIHQQADPDGLLLSDFVQPLFQKCSAACLVPISMQPRLLASPDRISVPSAERQSHQLTGSAELATRLSQRILQEGQCDEAQLSDPSAGCLYWVALSCLRERGGDLPAAQLFARVQESLGPKGALPHLRIFCDLLTREVASAADNAEVSALHHVTSLVYTHRLFPLHRLLLVLLMRPFAERRLELAAFRVLRHLLSADTPNSPMAGLVPVLNSFPPSGGANGSLSALVSQLRQVYDDTPGGSSSSASLYSHAAIRVALLMDTALARLVQLQPPDSCALLSATLAPFLRHMPAPGTCLISLLSVYDPPAPLRLYLAAALLAPRMEAAADGAYLPSDCLPFFKSLLASPSLPAPAAQASSSDWLSCIGPPEAALNRLSLALSSHGRRGFPQLDWFGHEWPSSCSHAVNCCALQLLLCPVDLPAPVMPPRTAGLSSGFILSSKSKPHSNRQSDGGAAAKKARLEAEQDAFLDADDGGDGEEDDEGGGEESEDADEDEVDKLDWQSAGLLLAQMPARFTTRLVQQPLLALYDQLSGAAPHKALGHELASRPEVCLWFAYLSHAGPGRVAQLPNELVAELYHCLAEVDAACSGRLEHQDALADYFYHIKYMFVGDGVRRVASSVIERLSPSMQSRLRSIAPGHQPDGPADAPNFPAQSEN
Length1230
PositionTail
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.07
Grand average of hydropathy-0.024
Instability index54.78
Isoelectric point6.05
Molecular weight135181.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10715
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      15|      17|     837|     851|       1
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  837-  851 (26.29/14.01)	TALARLVQLQPPDSC
  857-  871 (29.14/16.42)	TLAPFLRHMPAPGTC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.28|      28|      73|     924|     951|       2
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  316-  341 (37.76/17.58)	..AP.....AFDTTLLVWFSLTQKSSAPNERLP
  924-  951 (51.47/26.60)	LPAP.....AAQASSSDWLSCIGPPEAALNRLS
  994- 1024 (39.05/18.43)	LPAPvmpprTAGLSSGFILSSKSKPHS..NRQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.57|      34|     652|     111|     150|       3
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  111-  150 (51.10/43.92)	RVIRQIV.......PIAGvgnycMPPAILQHPqPSSVTNVPVNLLAS
  764-  804 (53.47/29.20)	RVLRHLLsadtpnsPMAG.....LVPVLNSFP.PSGGANGSLSALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.50|      21|      73|    1082|    1102|       4
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 1082- 1102 (37.38/24.19)	LAQMPARFTTRLVQQPLLALY
 1154- 1174 (37.12/23.96)	LAEVDAACSGRLEHQDALADY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.34|      30|      73|     422|     451|       5
---------------------------------------------------------------------------
  422-  451 (46.43/25.70)	QLATMSL.LAINSL.....L...YNLLSTHADSPVVLDT
  457-  487 (26.14/11.39)	VLMHHDLnLQPKSV.....LteaFTKAGNTGGSRVL...
  492-  526 (39.77/21.00)	ELATYHL.NSVEPMqrhllL...QNLVTLAKANRLGLDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.89|      24|      47|     345|     368|       6
---------------------------------------------------------------------------
  345-  368 (48.07/27.03)	PPPMQPMMSELMEKFQQMSQ.SPSY
  393-  417 (36.83/19.10)	PQVVSPLNSKLVEALKQSDAiAPSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.24|      13|      17|     674|     687|       7
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  674-  687 (18.77/14.15)	LRERGGdLPAAQLF
  694-  706 (24.47/13.52)	LGPKGA.LPHLRIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.75|      24|      53|     185|     212|      11
---------------------------------------------------------------------------
  185-  212 (36.05/26.58)	DLL...LSLLSLHTapraSKISRCLFLERCL
  236-  262 (41.69/21.47)	DMMwrhLGLYSIHL....CRLHLVRFPEMCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.39|      15|     745|     374|     389|      13
---------------------------------------------------------------------------
  374-  389 (27.68/19.87)	PEEFRWFAYVYNAyAP
 1122- 1136 (32.71/18.36)	PEVCLWFAYLSHA.GP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      18|     177|     628|     645|      15
---------------------------------------------------------------------------
  611-  628 (29.04/15.75)	QPRLLASPDRISVPSAER
  629-  646 (27.88/14.82)	QSHQLTGSAELATRLSQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10715 with Med23 domain of Kingdom Metazoa
Unable to open file!