<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10709

Description Uncharacterized protein
SequenceKLPRNSAHSLPTPPGISVEAAAHASSLVQSLTLRLYRSGQYQPPVNFRVPPPRASLVALVREWRLSGCPLDPPERRVRTCPPCVHLGVNELGPSSRCAEAVGSVQSEWQQLCHLVQMCLPLTRRSNWPPDTCLVSFGFPGLRIAYGPVRDEEGVPVWEMHMIQKAAAGQKPDIYINFVSRRPSAPNPHFPVREQLSKDFLRHHSVLHLLRQLASSYQALAPLACLAGGWHISPQLTCCRQTVLLAHPYRLQLEHRGRVTLSVRLDADNCVRLASPQLTPLQLIRLHPAARIDSDQSVALPAADWADLRPHHWLACACQFLALCQSCERQQQQRHELLDDGCLLTLRTERLGCLNVRLCLEGVLCHVDAGEPALATFVQRLLFHPPYRWQAVASLQALLCSPGALRACLCLEDPRLLPPPNKPLLTQLQLLTVKDYPSTQFYRLGMPAVGIYLLHDQRPELYFSLLLTDSESRRCLSIMILYDELKNDAKLFNPFAASGGGGLIAAALMRLDAEAIKPVQTACGGEGRECSLPHLFRAIASGRWIQ
Length545
PositionTail
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.06
Grand average of hydropathy-0.066
Instability index60.36
Isoelectric point8.75
Molecular weight60608.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10709
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.66|      26|      42|      45|      70|       1
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   45-   70 (47.63/19.82)	VNFRVP.PPRASL..............VAL.VR.EWRLSGCPL
   75-  114 (31.50/11.09)	RRVRTC.PPCVHLgvnelgpssrcaeaVGS.VQsEWQ.QLCHL
  121-  147 (28.53/ 9.49)	LTRRSNwPPDTCL..............VSFgFP.GLRIAYGP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     291.09|      83|     135|     192|     279|       2
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  192-  268 (103.72/47.63)	.............................REQLSKDF..LRHHsVLHLLRQLASSYQALAPLA...CLAGGWHISPQLTCCRQTVLLAHPyrLQLEHRGrvTLSVRLDADN
  269-  361 (119.28/44.26)	C.VRLASPQLTPlqlirlhpaaridsdqsVALPAADWadLRPH...H...WLACACQFLA..L...CQSCERQQQQRHELLDDGCLLT....LRTERLG..CLNVRLCLEG
  364-  419 (68.10/21.88)	ChVDAGEPALAT...............................fVQRLLFHPPYRWQAVASLQallCSPGALRAC...LCLEDPRLLPPP.....................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.14|      25|     286|     153|     181|       3
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  153-  181 (43.01/29.70)	GVPVWEMHMIQkaaaGQKPDIYINFV.....SRR
  444-  473 (39.13/19.63)	GMPAVGIYLLH....DQRPELYFSLLltdseSRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10709 with Med14 domain of Kingdom Metazoa
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