<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10703

Description Uncharacterized protein
SequenceTHRRHRAAAAVLATQAVGTTAFGQQDCCNTRFVGLCHRCRTHAGRNAAGHARFIRRRVATPVSVRTPRTGGHAVRSSIVGEQLDQSQLSTGHQSIQASQAQNRTFEACNICVCHGDLTGSEAGLYMPGLFGPGGLRLARCGFSAQPPTGPLGLGSINIFYVRRSVDYWAIDDALDYRPWPSTLFAPAFRSPPAQQQQFAVRRNQLRRRCSCRWRAAAAAAPQNCLIPLASRQPASRDCSQPQQQQQPFSLAEQANPAAPMELNWPAAHGCSDLVRLLKSLRPWFQDSLWGKALQGNYWVTGPMTWQEFHQRGMLIAPTAVRDWSASRLGALLAAPKKLQFVVLAPVQASRVLKKAVRRTMSELTVAFADCKLGEHSPVALSTDGDFFLDTGRLESQNCRLIAWFICWFVAQTEACQLRDTTVAGSAPRAICVLLALRVYTQVPKRVPYPTDGRSLCGFGPLKRSRELPARAGHDRPPGTRTLLEWICDLPEDQSSTLAACAQPAGPSRPRRTAMWADLLKRASLQQRGAAGSPLCAQSTPRSPSARPARPAQSGRSATRPPSVRRRSACQQRITHILGDPGVLGGDTGNDLFNDLDLNFDIQLPDIEEPVVGPQGGDGSATLRWPCASLVPVAPPEQAAVCLRATACTSTQLASCDRARRCRPLCDRLATHPLNTYKTTEVLRYACWRPATVSAGLALIRPLAIGSP
Length707
PositionMiddle
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.07
Grand average of hydropathy-0.280
Instability index69.14
Isoelectric point9.90
Molecular weight76976.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10703
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.87|      47|     101|     443|     489|       1
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  436-  482 (87.43/37.69)	LRVYTQVPKRVPY...PTDGRSLCGF....GPLKRSRELPA...RAGHD..RPPGTRTL
  483-  513 (46.65/16.74)	LEWICDLPE........................DQSSTLAAcaqPAGPS..RP..RRTA
  514-  564 (55.79/21.44)	M.W.ADLLKRASLqqrGAAGSPLCAQstprSPSARPAR.PA...QSGRSatRPPSVR..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.06|      13|      15|     123|     135|       3
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  123-  135 (26.85/13.22)	GLYMPGLFGPGGL
  141-  153 (25.20/11.96)	GFSAQPPTGPLGL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.23|      16|      19|     609|     626|       4
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  609-  626 (27.98/18.10)	PVVGPQggDGSATLR.WPC
  631-  647 (26.26/10.67)	PVAPPE..QAAVCLRaTAC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.52|      30|      48|     190|     237|       7
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  190-  224 (52.25/24.77)	SPPAQQQQ.FAV.RRNQLRRRCSCRWRAAaaaapQNC
  239-  270 (48.27/29.66)	SQPQQQQQpFSLaEQANPAAPMELNWPAA.....HGC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.09|      40|     628|      24|      64|       8
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   24-   64 (70.31/38.61)	QQDCCN..TRFVGLCHRCRTHAgRNAAGHARFIRRRVATPVSV
  651-  692 (70.79/34.98)	QLASCDraRRCRPLCDRLATHP.LNTYKTTEVLRYACWRPATV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10703 with Med13 domain of Kingdom Metazoa
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