<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10699

Description Uncharacterized protein
SequenceMMVSEKLTFIDDFLTISMVFLFRLAGVPEPHNEKSANYSREAKFSFSNAAAAAEVPNTEVYLQGSVLKPFTEFLLTRLRGICDSPGDEFRDQESVFTCAVPASAAPACAFAGVSCTRTCPPTFVTWASPSPLTTASCRGPPTRCRCSPWTRPAAGGVPWASNTSSTSSPRAPCFRRGLLKITVYRVYRPGAHASLAPESSLVEVSGLGPSSLTAGMVESVLSVRDQLKSLVLLAKHDQKAPKARRTCARIETARAAAVKLEDLAEQPTTQRPHDRFNHVRWPQTCSSGGSVRLRQPPQSPHPGDLYDSVTSDQLIDKRETMNRVLPAALTKEGRSGEKASNAEARKPVALKPKTKKACCAGKVETEVKSRRPAVLLGGPDYCPRVATSSAVPHSTSASLGALYRFSSLPSSPRTTVACSLPIAIAWQRHCTAQVRGLPALSGLAAAPNSRIESFEAVGLRTAGYCATPEGVGRECIGDAIEGVRGPLEGSRVPVQLISPADSLRAFLIGEVPRPQAHHRALRPRVLQPQFCELLAGWNGPVVDVGRQARRRQQSSLAAPKPQQLRPAAFGDDSDSEEIADTQDGPRPTRLEPPFSIELPSCRSPGPHSARLAGPCGPLSPRLPCCWICCPAASPLSSCITRPTAPRQPSAPSGAVKSVGQLLRLAAGGSWQNWYSKHAWRPCFCASCPARPGPLSVSVSATTGEG
Length705
PositionHead
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.06
Grand average of hydropathy-0.266
Instability index60.49
Isoelectric point9.39
Molecular weight75248.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10699
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     191.47|      43|      46|     413|     455|       1
---------------------------------------------------------------------------
  413-  455 (73.61/38.52)	RTTVACSLPIAIAWQRHCTAQ....VRGLPALSGLAAAPNSRIESFE
  460-  501 (59.61/29.80)	RTAGYCATPEGVG..RECIGDaiegVRG.P.LEG.SRVPVQLISPAD
  504-  541 (58.25/28.95)	RAFLIGEVPRPQAHHRALRPR....VL.QPQFCELLAGWNGPV....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     174.53|      23|      23|     584|     606|       2
---------------------------------------------------------------------------
  130-  152 (28.94/ 7.15)	SPLTtaSCRGPPT..RCRC..SPwtRP
  584-  606 (44.48/14.78)	GPRP..TRLEPPFSIELPSCRSP..GP
  616-  630 (34.59/ 9.92)	GP......LSP....RLPCCWIC..CP
  633-  655 (35.87/10.55)	SPLS..SCITRPTAPRQPSAPSG..AV
  678-  693 (30.65/ 7.99)	AWRP..C.....FCASCPA..RP..GP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.68|      22|      23|     326|     347|       3
---------------------------------------------------------------------------
  326-  347 (34.54/23.83)	PAALTKEGRSGEKASNAEARKP
  351-  372 (37.14/26.28)	KPKTKKACCAGKVETEVKSRRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.35|      21|      30|     263|     283|       4
---------------------------------------------------------------------------
  263-  283 (41.09/26.04)	LAEQPTTQRPHDRFNHVRWPQ
  293-  313 (39.26/24.52)	LRQPPQSPHPGDLYDSVTSDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.20|      20|      26|      82|     101|       6
---------------------------------------------------------------------------
   82-  101 (38.88/18.91)	CDSPG.DEFRDQESVF.TCAVP
  108-  129 (30.33/13.30)	CAFAGvSCTRTCPPTFvTWASP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10699 with Med18 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DKRETMNRVLPAALTKEGRSGEKASNAEARKP
2) VGRQARRRQQSSLAAPKPQQLRPAAFGDDSDSEEIADTQDGPRPTRLEPPFSIE
316
544
347
597










Molecular Recognition Features






MoRF SequenceStartStop




NANANA