<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10694

Description Uncharacterized protein
SequenceMVEETQDMTSLIKQVNDTLEKYDKILINTGSQLCQLQTSMTNQIALVHTSMLTLNDVAKKEIEVDLAIKVTSRFSKTHSLKAPDHFRKQDMPRPFPSTYDFANSGLTLARCSIKENTSIYHYIKNKEAQAEFKRKFQRYCNNLPPLPEKTENVGAKEYELRNNLAKQMQTPSLLPPQQLLQQQPLQSTITYQPTQGQLMMERRAQAAKPRFPEDIHQQQRFNQHQQQLHQLQQDAGHHFPHPQQPPNNFQHGGYPSHHYTQQHLPPHQQQHHQFNPYKQANNFDQGHPSYFGHPQNMGGFPRAGDPNLGRGPPQYRPYPQPQHPTYPNSQTTTPSYPNQISFNETTSSGNNSSFEQQPSSQAPTPTNPHNYPLPQPTEPPPHHQNEPPELNIITPDERQALKGTYEDSNSLSYLQTTLSFALDPNVKWTRGKDYIYEDSSDEGQSEEDEDDSSSEDGSVDLIEARDSSNGYLMKRKVRDVRREMFDEEEEVEGENPLEVMFKQFKPFPDLEEIEDEGGKEEGEVTDKSPESFVVSPALNSDQEHEEDQETEGLHDDYMDDLFY
Length563
PositionMiddle
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.08
Grand average of hydropathy-1.168
Instability index59.66
Isoelectric point5.06
Molecular weight64756.17
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10694
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     224.07|      48|      50|     208|     255|       1
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  208-  255 (98.97/37.46)	KPRFPEDIHQQ..Q..RFNQHQQQLHQLQQDAGH..HFPHPQQPPNNFQHGGYP
  261-  306 (70.71/24.70)	QQHLPP..HQQ..QhhQFNPYKQA.NNFDQ..GHpsYFGHPQN.MGGFPRAGDP
  351-  389 (54.39/17.34)	NSSFEQQPSSQapT..PTNPHNYPLPQPTEPPPH.....HQNEPPE........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.58|      20|     142|     163|     188|       5
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   76-   98 (32.91/11.89)	KTHSLKAPDHFRKQdmpRPFPST
  169-  188 (36.66/14.71)	QTPSLLPPQQLLQQ...QPLQST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10694 with Med4 domain of Kingdom Metazoa
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