<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10693

Description Uncharacterized protein
SequenceMTWRFDEESKYLFKAHLPYSTENLSVQTYFQTSIFRQPRGQILLHNYNKPQTSVSIFPTIDVCKDAILQAMYLIEESTMPINDPANQYTWLHLNHFVIYTCHIGCSSFEDLTSVLKTYLTTNPYKKARGELMWLFLQFIAFKNKDMTLNIMNNIADIYRLLYTEEQSWSGSGMDIQIMVKFFAPASIWVQFQHRFRDGTVEPPSEALRIQINHFKKEIKNNQSLHDGMLIVLANSFSNNREIFENQIYSTLSKQLEADPHDEPWLLPYGFKAEGRCKAVELVSIDCFTFHARDFLFQYMRRVFHKMSKNVVTMPPMVSGEMNVTQKMPSPASIESIGPYVLSNLMYSAFEQLILKIFTWTSQSDIVKMSTEVIKHSLQESKKKDKNPRLQFYGIPEIFTSDTTGPGFNVCPEIVRIFSLNYVRSMKMTGIESASAMTAITSLNFYFPASANAYFNNGSVVYKTCEGMPEEKTKFMVDQLDQDQLADHISSEKEYLHRNPRGNTIFVVIYRALFGNSQKQMNPTFYKVLENINIKEIINSVNLFVDYLIYKWSFGIYTPDEQDKCIKILNDMVFHYQVFHFDRLFISLVMHANDDKSIETSILIIHQLVTKHEDLKQRLNYILAFSPSKQSIPSADSETFFKTMTDYYKKFPENTYPELYAKSQNEDPTLPPAGQTLHACVIEIMTTEIEPVEIIKCFIELGLHSTSKIPYEHLNAVGLLISALPKPYYDEFLELVIGFFDLEFLKDDADVELVFTNLNTEVYHYSTPKIIAHLAIAHSVLQHAPASLLTSIPDMFKSRMLDAVNNECQLFFAIRIIVIVMAKISDIKDRVKKQLEYLTLTILIYELTAKIGDKNRKPLKKEDALIDVLYNLKYAYVGDSVRDLAEQCLAKTHGSLQEKAKFIHKGVVQSNLHGKTKNLLNVVSAQDQQYLQQQPLYQTKPEEVPEYQQPSRNISFNNQMPMHNFGNTSSQIINPINAMSAMNTLSTGPLMNMGNMSGPSSNMTMMLQSPKPSPSNFDVDKSYKEQEAAKRHYEMSNPMEREKHELAIKQDHERAMHTNTMNHSRPLGRLGSRDEFLRRENEDVKNASCSFDEDTFCNWINFDDYWKTGEDVELDPIHSIMNSPTGVGKFAFIQKEPANDQPGFLVSPELNTPPESTTKVIFYYRKNTNSPILDICVTRGDITQLRCIESVSDKGPQQWILKNIRLPVQTEPFKIVFRVRNMRSIMDVVAIDDIIIETVPNNNGRMTVIKSQKGTASSNINSGLIKQIPTQQSGIEFDVQPAAVTRAVSRTTPPASRFNVGEFPSFANGVDIFIPDIGKGCKAIRCSFMKDNCFWSIGKSWKRIDANLAVELPGTDSITSGFFLVPLGSFFEFDLWMSDTATIVVYQNVEGKQNNLFNRKGGLTNNGWHRFRIPLQASFSPSSVSLQSLIGRNDFITISNVKLVNGNGEEVSCESVQTETPLETKNPYVKTDNPFTIQRDSPILTRLNGQPAVFPINNNVSPLKPIKPMKYGDFERLTSLQKATMTGENMNRPRIYPLSAVTELPNNNPQVDSNSMPDLMKLTQHIPTEWKNQFMKSLTPDDTLKPKSPFGDNEPPKQQPNMGLLLSQIGGNPVLENQLKQLAQSVNA
Length1627
PositionTail
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.10
Grand average of hydropathy-0.342
Instability index46.29
Isoelectric point6.34
Molecular weight185615.20
Publications









Function






Annotated function


GO - Cellular Component
membrane	GO:0016020	IEA:InterPro
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10693
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.54|      23|     132|     372|     396|       1
---------------------------------------------------------------------------
  372-  396 (36.90/24.83)	VIKHSLQESKKKDKNPrlQFYGIPE
  507-  529 (41.65/22.42)	VIYRALFGNSQKQMNP..TFYKVLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     391.25|     100|     210|    1198|    1302|       2
---------------------------------------------------------------------------
 1198- 1302 (157.33/97.84)	WilKNIRLPVQT..EPFKIVFRVRNMR..SIMDVVAIDDIiieTVPNNNGRMTVIKS.QKGTASSNINSGLIKQIP.TQQ..SGI..EF..DVQPAA..VTRAVS...RTTPPASRFNVGEF
 1407- 1513 (130.56/70.94)	W..HRFRIPLQAsfSPSSVSLQSLIGR..N..DFITISNV...KLVNGNGEEVSCESvQTETPLETKNPYVKTDNPfTIQrdSPIltRL..NGQPAVfpINNNVS....PLKPIKPMKYGDF
 1517- 1602 (103.35/54.12)	...........T..SLQKATMTGENMNrpRIYPLSAVTEL.....PNNN.......P.QVDSNSMPDLMKLTQHIP.TEW..KN...QFmkSLTPDD..TLKPKSpfgDNEPPKQQPNMG..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.37|      22|     130|     108|     135|       4
---------------------------------------------------------------------------
   22-   43 (39.01/20.84)	ENLS..VQTYFQTSIFRQPRGQIL
  109-  132 (33.36/30.52)	EDLTsvLKTYLTTNPYKKARGELM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.14|      38|     360|     283|     328|       6
---------------------------------------------------------------------------
  283-  328 (61.70/61.23)	SIDCFTFhardflFQYMRRVFHKMSKNvvTMPPMVSGEMNVTQKMP
  633-  670 (69.45/46.76)	SADSETF......FKTMTDYYKKFPEN..TYPELYAKSQNEDPTLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.77|      21|     360|     729|     752|       9
---------------------------------------------------------------------------
  729-  752 (27.23/26.72)	DEFLELVIgfFDlEFLKDDADVEL
 1093- 1113 (43.54/27.53)	DTFCNWIN..FD.DYWKTGEDVEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.51|      58|     206|     924|     988|      10
---------------------------------------------------------------------------
  924-  988 (94.28/73.81)	AQDQQYLQQQPLYQTKPEEVPEYQQPSRNisfNNQMPMHNFGNTSSQiinpINAMSAMNTLS.TGP
 1137- 1195 (96.23/58.33)	ANDQPGFLVSPELNTPPESTTKVIFYYRK...NTNSPILDICVTRGD....ITQLRCIESVSdKGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10693 with Med23 domain of Kingdom Metazoa
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