<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10692

Description Uncharacterized protein
SequenceMRTAVESEVNDIRKCLLKMIDGGKNLDELPSLLSALENMDITVDILMKTSIGKIVNDMRRKIENEGLTKRMKTLIKKWKSLSDVSGKKAPSTPNNERSSSVKPITTKPVVTYTPVSIKPHADEYRNKVVGMFIAALKIDELPEGTLDVDSLAVEIEQAHYDAYNGTDDKYKSAIRSKIFNVRDKKNPNLRNNILTGVIEPKQFAVFTSEDMQSDSMKKLREQFTQEAINEHQIAVAEAGDANGIHKCGKCKSKLVNYFQMQTRSADEGMTIFYNCQKCGNRWKQ
Length284
PositionUnknown
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.06
Grand average of hydropathy-0.581
Instability index39.86
Isoelectric point9.00
Molecular weight32040.46
Publications









Function






Annotated function

DNA-dependent RNA polymerase catalyzes the transcription of
DNA into RNA using the four ribonucleoside triphosphates as substrates.
Component of RNA polymerase I which synthesizes ribosomal RNA
precursors. 


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
mRNA cleavage	GO:0006379	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10692
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.75|      26|      27|     228|     253|       1
---------------------------------------------------------------------------
  198-  226 (29.06/15.68)	IEPKQFAVftSEDMQSDSM.KKLrEQFTQE
  228-  253 (43.39/26.36)	INEHQIAV..AEAGDANGI.HKC.GKCKSK
  255-  281 (39.30/23.31)	VNYFQMQT..RSADEGMTIfYNC.QKCGNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.35|      28|      96|      66|      95|       2
---------------------------------------------------------------------------
   66-   95 (41.97/34.53)	GLTKRMKTLIKkwKSLSDVSGKKAPSTPNN
  165-  192 (48.38/31.59)	GTDDKYKSAIR..SKIFNVRDKKNPNLRNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10692 with Med26 domain of Kingdom Metazoa
Unable to open file!