<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10688

Description Uncharacterized protein
SequenceMTAPVSGSLNSSIRNIFKTNAFYIPNSAKKTSAAEIADEGFNSGGDTMVNVEGKSEKKHSEEIEKLSNFALTNLKDEELGQHDSSQLNDDINTSQLFNDSTEYDNSVFEKSTSSENDSQNDEAAQNALHNGSNENDVNSGITQGASDNGIIVNPYEGDVSERFDDINDENDILAAVINANRSFCVSKKSKTKLSARLSSSFSKFTSFINEKRRKKGKELEVKKPKSDHEAFTDEAMTKESTKNDYSYQINQTCVSPLDNYFGEQSNLGGSSQRFGVGLSNGSNFKYTGQLHAGLSPILESPARLSHLFFDNKSETVNLEGRFSQNKSFELGGLSNKNSIVCVDLNSRAAEEVAKLVEDRECHACGRIGNKVFNFGGLNNLKIEKFDIETNTTETLDFEMNLPTKYPSCAVVEGRIFSIGGFAGGNIVSSVDYFESEKMSWIKSVDLVAPVQKHKSVVIEGVIYVTGGEGCSNIQRFDEREGRWTLLREDPLKSFDAAVSTSNNNILCCGGEIEDSVKDECRIYELSTNSWRAIAIGGLSNKNSIVCVDLNSRAAEEVAKLVEDRECHACGRIGNKVFNFGGLNNLKIEKFDIETNTTETLDFEMNLPTKYPSCAVVEGRIFSIVGFAGGNIVSSVDYFESEKMSWIKSVDLVAPVQKHKSVVIEGVIYVTGGEGCSNIQRFDEREGRWTLLREDPLKSFDAAVSTSNNNILCCGGEIEDLVKDECRIYELSTNSWRTIASLPLTLISASSVETKHANLILGGWQKSGTISDIYSYIKSENMSRLLSGGYQHEPEKIGQSIHNLETRIREMKYIIEETLNQLSLAQHNVKYEDIMGLMTSLANAVSQVQKLLKRSALDGNMDDEGAYLSNHVLAPQFISMDFDADLYHKSEGRIPYWNHDVLPDYLRTKLMPTPEEEEQAIEDEIASKQVDYVGKQILAMTKNFESMLSAISEGNKCAAEVSLEKMTSNPAETRRMVMAVMHGTELIPEKPVTDKDTAPKEGALGNGSCFD
Length1010
PositionHead
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.07
Grand average of hydropathy-0.469
Instability index46.59
Isoelectric point4.93
Molecular weight111615.21
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10688
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     639.00|      86|      88|     331|     416|       1
---------------------------------------------------------------------------
  331-  416 (166.29/106.58)	GGLSNKNSIVCVD.LNSRAAEEV..AKLVEDRECHACGRIGNKVFNFGGLNNLKIEKFDIETNTTETLDFEMNLPTKYPSCAVVEGRIF
  419-  506 (154.20/98.27)	GGFAGGNIVSSVDyFESEKMSWIksVDLVAPVQKHKSVVIEGVIYVTGGEGCSNIQRFD.EREGRWTLLREDPLKSFDAAVSTSNNNIL
  536-  621 (166.29/106.58)	GGLSNKNSIVCVD.LNSRAAEEV..AKLVEDRECHACGRIGNKVFNFGGLNNLKIEKFDIETNTTETLDFEMNLPTKYPSCAVVEGRIF
  624-  711 (152.22/96.91)	VGFAGGNIVSSVDyFESEKMSWIksVDLVAPVQKHKSVVIEGVIYVTGGEGCSNIQRFD.EREGRWTLLREDPLKSFDAAVSTSNNNIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.42|      28|     202|     507|     534|       2
---------------------------------------------------------------------------
  507-  534 (62.66/45.73)	CCGGEIEDSVKDECRIYELSTNSWRAIA
  712-  739 (62.76/45.82)	CCGGEIEDLVKDECRIYELSTNSWRTIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.46|      41|      45|      78|     122|       3
---------------------------------------------------------------------------
   82-  122 (70.80/42.00)	HDSSQLNDDINT..SQLFNDSTEYD.......NSVFEKSTSSENDSQNDE
  129-  169 (59.24/26.75)	HNGSNEN.DVNSgiTQGASDNGIIV.......NP.YEGDVSERFDDINDE
  173-  210 (27.42/ 9.33)	.....LAAVINA..NRSFCVSKKSKtklsarlSSSFSKFTSFINE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.62|      46|     265|      17|      63|       4
---------------------------------------------------------------------------
   17-   63 (73.08/51.92)	FK.TNAFYIPNSAKKTSAAEIADEGFNSGGDTmVNVEGKSEKKHSEEI
  284-  330 (74.55/48.04)	FKyTGQLHAGLSPILESPARLSHLFFDNKSET.VNLEGRFSQNKSFEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10688 with Med8 domain of Kingdom Metazoa
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