<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10677

Description Uncharacterized protein
SequenceMNLDYRASDLLGNVYKNGNILFHPATDQLYSTINNKIKVFDLKDNISSLLPFTSNYNIVRFTLSPSGRLAFIVDCLGRAHLINTAKGVAVASMKVSKNVGDIKFSPDSKYMAIAFDGKVEVYLLNKATFDSFNPWFKTCSVTLSSNKITHLNWSDDGEIIIAGGEDKQVAVFKPEKTSYQNQDKKMKMKLMTCHYGSIVSCFFLKNSYDCLSVDDRGYAILWKSNQIYGKYASNRDEEGKMGPVFFDRTERIRLQDAASIPNNVDCTNADFHQANNILVTSYANGAIIINEVPTFSMIQSIKVGDVAVKSVAFNKDGDWLGIASKGGALGQIAVWGWQSECYVMNQQSHTHTITCVQYSPSGSLIATGGLDGKVKIWDAGSGNCQITFTEHKNSVTCVCWTQGGNVILSSSLEGTVRAHDMKRYRNFRTFVCPEQTQLSCVTTDKTSDLVIAVAKDDYKIFIWTMDTGNLVDVLAGHSSRIAAIALYGNMLASVSWDKTMRITNIIDSSVETIQLGEEALSVTYAPCGKLMAVLTYDSSISMYSTRTSAPIGMIDTKFDVNPGRGAFDIIKKGTSSRSKTFEYIEFSPDSNLILAGGNTNYVCLYSVKDRVLLKKIQMTVNFSFDGVASDINFRQLTEFGNLDHVELSSDEEGDDNGKKKKMALAGTKISDAGERAYKPTMRANDVSYSPTGRSFAIANTEGVLIYSLDRYDKFDPFMLDVGVTPQLIETLLLANDYLKAIVMSMKLNDELLITRSLMEVPLGDIKIICQQLPFIYAEKLFIWMANNWKKITKRNIEFIYLFMEHLVEYHAMNFKGNARAVIPAVNGLLQSMEGQKKLLLDITKKNKSTVEYLLHVRKMADKKADIST
Length868
PositionTail
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.10
Grand average of hydropathy-0.136
Instability index33.19
Isoelectric point7.96
Molecular weight96629.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10677
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     247.71|      40|      40|     326|     365|       1
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  135-  160 (32.53/18.02)	...........WFK.TCSV....TLSSNKI......THLNWSDDGEII
  326-  365 (71.24/48.91)	GGALGQIAVWGWQS.ECYVMN.QQSHTHTI......TCVQYSPSGSLI
  368-  407 (57.93/38.29)	GGLDGKVKIWDAGSgNCQITF.TE.HKNSV......TCVCWTQGGNVI
  413-  450 (42.39/25.89)	EGTVRAHDMKRYRNfRTFVCP.EQTQ...L......SCVTTDKTSDLV
  488-  531 (43.61/26.87)	GNMLASVS...WDK.TMRITNiIDSSVETIqlgeeaLSVTYAPCGKLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.39|      29|      79|      14|      42|       2
---------------------------------------------------------------------------
   14-   42 (51.43/31.75)	VYKN.GNILFHPATDQLYSTINNKIKVFDL
   95-  124 (45.96/27.63)	VSKNvGDIKFSPDSKYMAIAFDGKVEVYLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.48|      23|      23|     766|     788|       3
---------------------------------------------------------------------------
  766-  788 (45.60/32.53)	KIICQQLPFIY..AEKLFIWMANNW
  790-  814 (37.89/25.83)	KITKRNIEFIYlfMEHLVEYHAMNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.65|      25|      99|     584|     610|       4
---------------------------------------------------------------------------
  584-  610 (37.31/31.41)	IEFSPdSNLILAGGNTNYVCLYSVkDR
  686-  710 (44.34/27.26)	VSYSP.TGRSFAIANTEGVLIYSL.DR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10677 with Med16 domain of Kingdom Metazoa
Unable to open file!