<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10671

Description Uncharacterized protein
SequenceMGSNSMEDCKTNLFHLTRLDTLRWKCFTKENNVPTQRKSTVQNDQILMAYSLCVNDGLICTWKRVNKTEDSKAIKEEDLDVYSKKELWVFWFDEIDYKNINVNTTELTCVDEEGVFSIVGLKYDVRLIFFNALHKKIERTLLKQGYMLFGRWFTIPRDQTFLESKKTAPNTTVVFQFNFYIQDDVNVRIIVNAQRQSVLNKIQRHHLQNKDRQSVILAPRGLRAFLVPDQPYDSKNKKEISNYHGNDYSEIDVISEEQYNMWRRFVYLNQFEERSSDPDPQKNKNSSPDIPKMILVEIGKLKLLYPSVFVAIVDDEKDKFNKMGCFYEKEVNEDQEVESIMSNEDNRKNMFLNERQVARINDNSDRDFEMVHNKTFCRHNTTGLSLFQGLVESMFSRNPVKFEDTTSNFQDNARTANNTCYNDLLKLPTCCRACEDDKKLAELGNPKRKYPEKTNDSLLKIIDGFPSSSAFPYLQNISKDEENEKPCLQLLNQLSNPSSLKSVKSGRKKGKRSKLDAIPNIPQSQASASPIGSVLSKSLDTSISKENDGSVNENRKTDLNFKLFQLPVQDKNKRQKLLKHIAFEEPFKTVDGIIFNRDEKKAYDLHLAKQSLPNEDTMKARDVAYFDTSVRMNYQKPYENTELPKQNSPSRHDDCHFLEMFCYKEESNVSEKETLVEDSSLPNYTLTQSNPGYHALCIKEEFYDSSNNEYFEDQQENYSVHSVKTHYSSDNESDDVDNDSEEEFKIETSYSRPLCTPTNPESCLSVQGNNMTETSGDPATFKAPQSNKKVLTKLSDLIDWEPDIDGDAVLSPPPSNEIVEPYSMPSISDHIGVDHYLSETLNAIYPTPPDINNPSPFKPSSVLMSSIASVEDDLFYKQRAIFEKEMFLNTFTNLLSKEPIIQTKTVASTSKFDVPDNNLDIPITHIYFDFNNPEFKKFVQRVKTLHQNRISEYIMNGQTSKTIKHLPDYFKVMEKLALCDYKMLYESYMYYRTNPEPDYSSKSYFFTRLSDDHSSDCVCKYCQLLPDRPEYLPEKYGGSILYNYLPPPLIQPSILSNVDVADFKRKYGKKADNFLKAIYPRAVHTYNKIVKHQRPIFYSPVFRSWMIPKICSLAVKTFKQVNKTQCENGDFKYQLQTKRKGICNFYPINDPWCLLKQNPRNPPLMKHNRRHPLPGEFKRLLNCGLSIGTNLTTPAIDDKKKENLLKEDIKLDNRVAKIERNSRFKKSMEYIRRDLLSYDPTLSTTIYNQAQIPNNAVQSTQKQQSAAQFKQRGNVANSRGKSLDKAGSQNNLLGMQNMNPQFQGRDGGLYSGNSFNSSPMSNNVYQQKHNIPQMHNNYMPNQGFNQMNQQNIKPLMPYQGSVNSAPHMMPNNPMYNNHPSQSSIGSNMMQPHDMQRNIHPSQNIYSSIQNDSQRSTLGRSFPSSPMIYSNQHLQNSPAMSNDGSMQAPMTPQQFASVPSPLVNSTHSMLGMSPKIPSINNAYSNSGPNIQNAYYTPANTKMMQNPNPNMNPGMNSNMNPGMNPGMNPGMNPNMNPSMNYNMNSMGSNSMNMGQSNTSYPNQQQHQNSHLVQNQTFKKPQLEGEMNKNPYNSSNYNTPSPMGEVSNFAWLNPRRQQGNGDLDNCSFNGNKSIQKKYIEKVPKSNIDWSKIESFKKKAKPVVVPKITSVPVTIDLDSLTINILLQDTVLDLHYDTIFDSCPICSCNSNIRSKDLGLYIKPIKSLLDPNTVLKEWSGFYNASESLLCTCGFSGVRHRYLSYNAGLFPDDAYEATAIRNHYPKSNTLKWFDPTQLADLHFMDLIKASEQLKIKINEFIEKW
Length1817
PositionMiddle
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.09
Grand average of hydropathy-0.765
Instability index50.27
Isoelectric point8.10
Molecular weight208622.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10671
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     704.69|     212|     217|    1171|    1387|       1
---------------------------------------------------------------------------
  882-  984 (99.25/41.96)	FEKE.M.FLNtfTNL.....LSKEPIIQTkTVAST..SKfdVPDN.................................................................................................................................................................................nldipithiyfdfnnP.EFKKFVQRVKTLHQNRISEYIMNGQTSKTIKHlpDyFKVMEKLALCDYKML
 1120- 1223 (93.97/45.05)	............................................................................................................................................QVNKTQCENGDFKY.....QLQTKRKGICNFYP.INDPWCLLkqnPRNPplMKH..N.....................rrHP..............lPgEFKRLLNCGLSIGTNLTTPAIDDKKKENLLKE..D.IKLDNRVAKIERNSR
 1224- 1420 (312.25/156.19)	FKKS.MEYIR..RDL.....LSYDPTLST.TIYNQ..AQ..IPNNAVQSTQKQQS.AAQFKQRGNVANSRGKSLDKA............GSQNNLLGM.QNMNPqfqGRDGGLYSGNSFNSSP.MS...NNVYQQKHNIPQMHNNYMPNQGFNQ.....MNQQNIKPLMPYQGSVNSAPHMM...PNNP..MYN..NHPSQSSIG..SNmmqphdmqrniHP.............................SQNIYSSIQNDSQRSTL.................GRS..
 1421- 1605 (199.22/92.39)	FPSSpMIYSN..QHLqnspaMSNDGSMQA.PMTPQqfAS..VPSPLVNSTHSMLGmSPKIPSINNAYSNSGPNIQNAyytpantkmmqnPNPNMNPGMnSNMNP...GMNPGMNPGMNPNMNPsMNynmNSMGSNSMNMGQSNTSY.PNQQQHQnshlvQNQTFKKPQL..EGE.......M...NKNP...YNssNYNTPSPMGevSN.................................................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     299.25|      98|     133|      38|     139|       2
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   38-  139 (156.75/117.81)	KSTVQNDQILMAYSLCVNDG....LICTWKR...VNKTEdSKAIKEEDLD..VYSKKELWVFWFDEIDYKNIN.VNTTELTCVDEEGVFSIVGLKYDV..RLIFFNALHkkiER
  165-  274 (142.51/95.45)	KKTAPNTTVVFQFNFYIQDDvnvrIIVNAQRqsvLNKIQ.RHHLQNKDRQsvILAPRGLRAFLVPDQPYDSKNkKEISNYHGNDYSEIDVISEEQYNMwrRFVYLNQFE...ER
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     376.29|     109|     233|     750|     869|       3
---------------------------------------------------------------------------
  483-  521 (31.13/ 7.97)	.........NEKPCLQL....LNQLS.NPSSLKSVKSGRKK.GK....RSKL.DAIPNI........................................................................................
  750-  869 (184.24/128.21)	YSRPLCTPTNPESCLSVQGNNMTETSGDPATFKAPQSNKKVLTK....LSDLIDWEPDIDGDAVLS...PPPsneIVEpysmPSISDHIGV...........DHYlsetLNAIYPTPPDINN.......PSPFKP..SSVLMSSIAS
  985- 1112 (160.92/90.85)	YESYMYYRTNPEPDYSSKSYFFTRLSDDHSS........DCVCKycqlLPDRPEYLPEKYGGSILYnylPPP...LIQ....PSILSNVDVadfkrkygkkaDNF....LKAIYPRAVHTYNkivkhqrPIFYSPvfRSWMIPKICS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.72|      30|     334|     306|     345|       4
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  306-  345 (35.08/51.63)	PSVFvaivDDEkdKFNKMGCFyeKEVNEDQEVESIMsnED
  649-  678 (56.64/38.40)	PSRH....DDC..HFLEMFCY..KEESNVSEKETLV..ED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10671 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DQQENYSVHSVKTHYSSDNESDDVDNDSEEEFKIETSYS
2) YNQAQIPNNAVQSTQKQQSAAQFKQRGNVANSRGKSLDKAGSQNNLLGMQNMNPQFQGRDGGLYSGNSFNSSPMSNNVYQQKHNIPQMHNNYMPNQGFNQMNQQNIKPLMPYQGSVNSAPHMMPNNPMYNNHPSQSSIGSNMMQPHDMQRNIHPSQNIYSSIQNDSQRSTLGRSFPSSPMIYSNQHLQNSPAMSNDGSMQAPMTPQQFASVPSPLVNSTHSMLGMSPKIPSINNAYSNSGPNIQNAYYTPANTKMMQNPNPNMNPGMNSNMNPGMNPGMNPGMNPNMNPSMNYNMNSMGSNSMNMGQSNTSYPNQQQHQNSHLVQNQTFKKPQLEGEMNKNPYNSSNYNTP
713
1247
751
1597










Molecular Recognition Features






MoRF SequenceStartStop




NANANA