<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10667

Description Uncharacterized protein
SequenceMSEQPPANPIPLGDDQKTGIKVLLEPTREWSVLEYTNDGQEIRIPPATYTSNIAEIAQRINWKKIIGTGQGLDAKSEKAVQIPAVESPILIESLAEDEEDDRIPSPVRCKTPIGRDNGPWGVVAHYLKSSLEEVNCLLDTLTVLQTPYVKALTVASDNQSAVDYTAHNKAFTWITKRKAIAEAATVLNEGLKKRNASSKQMKCQEQDDFFEELKLMRENWRIRKVNKMIMGDLGYRIFGTKYAPHEIFEIYRKSKTTMEQDRREYERKCLENPGQIHTPVSNIQVTVPCDLMRRSLLTIRIMRDHQDNRAFITALNQKNKVDFLKAKPEDAKKLHWKNALYWAQESLIVRDIFNRLFGEAVQMKDRIAIQYDDTLIITLYDCWLLQIQKEFYTFDETPIKEYGDPYLNKAVRKLFMEDLCQRKNKIQSFVSMPLVSIYNPASVNSYSETSKADLDLSKEMIGRKNLCAGLLSVAAHYQLVNTVCDAITSFLLIHPEPILNWKWCKITESHSIINGYFSISGTSDPNKKKPFFIKITDDKIEMHLNNQEVVHCYKYGNNLLRHLRISASHYLINTIAEHSKLWSFQILACNLTHCELDPTYEQKPMLFMSNLSCSWLVVVKIDVVKTLDPEFYVRACNPGDTISNLETIFHQFRKLNYKLMVGSSLLKKCDLLFSMLRAFVDCTEEVKMIGRIADPLNGWSEMFLIPSSSNAATHYTFATPTSDTDKKGGNNGIENDDLNTSISITSSTPVMLLFFNGYATISNDPDFCDISCKPNYVAFMPIGLPPIACNTLLKVPDQRMITNDYTTRIYVSPPSQTADCESPTKITVFKDTQSKSELVDKTGFTTISLLDSSEAGFSSNAGQLSAYRFGSITEAPDQTLAFGHFAHYVPSTAEWVSGKTQFYSLRENCFLEFYGNLDGSNPYLIKIDGVTLDKMHFTQKHLTIHNNKYNQFIVPILKYGLHSIENSGQYVAYVVCKNVDSPYDSAGYVTAFNKRKTF
Length998
PositionHead
OrganismRhabditophanes sp. KR3021
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Alloionematidae> Rhabditophanes> unclassified Rhabditophanes.
Aromaticity0.10
Grand average of hydropathy-0.323
Instability index38.65
Isoelectric point6.66
Molecular weight113510.53
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10667
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     434.16|     135|     197|     383|     528|       1
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  383-  528 (221.83/194.70)	WLLQIQKEFYTFDEtpikeYGDPYLNKAVrkLFMEDL.CQRKNKIQSFVSMPL.....VSIYNPASVNSYSETSKADL.DLS.KEMIGRKNL..CAGLLSVAAHYqlVNtvCDAITSFLLIHPEPILNW.KWCKITESHSIINGYFSISGTSDPNKK
  582-  727 (212.33/156.50)	WSFQILACNLTHCE.....LDPTYEQKPM..LFMSNLsCSWLVVVKIDVVKTLdpefyVRACNPGDTISNLETIFHQFrKLNyKLMVGSSLLkkCDLLFSMLRAF..VD..CTEEVKMIGRIADPLNGWsEMFLIPSSSNAATHYTFATPTSDTDKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.50|      20|     392|     535|     556|       3
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  535-  556 (35.96/30.51)	ITDDKieMHLN...........NQEVVHCYKYG
  930-  960 (30.54/18.92)	VTLDK..MHFTqkhltihnnkyNQFIVPILKYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.88|      22|     864|     148|     169|       6
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  148-  169 (38.38/27.67)	YVKALTVASDNQSAVDYTAHNK
  973-  994 (41.50/30.54)	YVVCKNVDSPYDSAGYVTAFNK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10667 with Med17 domain of Kingdom Metazoa
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