<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10665

Description Uncharacterized protein
SequenceMNTSTALFNIPGMPQQKTFTPNARAVTSANVFLNALGGTSTAGSSGSPRGRPPGSGTGSRLSSPAMRNIPKILQRSSSQQSPRFGVLMGAAGTSQQQQQGQMVSPSTSATMQAGAQQHPQGSYIMSSSQMSINLPPGLKQQQQTSNDGTMQIPKVEQMSSDSSSSSSSGEEDDGK
Length175
PositionMiddle
OrganismMeloidogyne hapla (Root-knot nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Meloidogynidae> Meloidogyninae> Meloidogyne.
Aromaticity0.03
Grand average of hydropathy-0.687
Instability index80.15
Isoelectric point10.26
Molecular weight18096.78
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10665
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.42|      31|      33|      34|      66|       1
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    3-   36 (33.82/ 6.53)	TSTAlfNIPGMPQQKTFTPNARAVTSANVFlNAL
   39-   70 (50.60/17.55)	TSTA..GSSGSPRGRPPGSGTGSRLSSPAMrNIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.95|      34|      37|      79|     112|       2
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   79-  112 (60.44/26.15)	QQSPRFGVLMGAAGTSQQQQQG..QMVSPSTSATMQ
  116-  151 (58.51/25.09)	QQHPQGSYIMSSSQMSINLPPGlkQQQQTSNDGTMQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10665 with Med4 domain of Kingdom Metazoa
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