<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10662

Description Uncharacterized protein
SequenceMESLIPVISKLQDVFATIGCRGADVELPQIVVIGSQSSGKSSAIEGIVGRDFLPRGTGIVTRRPLILHLSHSPLKSALREQKKAPALDEWAEFGHAPGVIYTNFDEVRQEIERETERVTGSNKGISSVAITLTIYSHNVVNLSLVDLPGITKVPVGDQPADIELQIRKMLFGYISNPNSIILSVMPANQDFATSESLKIAREVDKEGNRTLVLLTKLDLMDQGTDAMDVLTGRLVPVKLGIIGIVNRSQADIIANKSIKDCLKDESKFLQTKYPTLASQNGVPYLTKTLNRLLMVIFIYPFALKLIYFQHHIRECLPQLKLRINTLMVHCQTILRSFGEAVIDKNRTLLHIITHFATAYNSTIDGTARNIETTELCGGARICYIFHETFTRALECFDPLENLNKLDVLTAIRNATGLRPSLFIPEVSFELLVKKQIERLEEPAITCVDLVYEEMLRIVQHCGIEVQQEMQRFPHLYERIHEVINHVLSDRLPPTKEFVSNLVSIQLAYINTKHPEFASDASLINSLQGASSDESMAMITEKVPASEAADGKTTTASLPNLENGTNGPTNVFGESAFYADIQNKVNLKKLHPTYWFNRNANKVEDDSDLGMDNGDGSAGVLTRTDKTVRRPLSVREKRDIAVIERLIKGYFIIVRKSIQDLVPKAIMNFLVNNVKENLQSELVRRLYNADDLNTLLAESDAITQKRAESAEMLTEMIFEQAGAVAPPYTSKHFRVDCIWYRPQQHIATLISGFYVIHHSNFPDSAFIINANKPDSQPASESGSAERPTATRSSAAPRATADKGFELQLDKFQSAGLTVEPTKFEVVGNEYHLKDFRLRVGTVTLGSSVKGTIVEIEYAASNIVMQCHELLQEIIDIFFPDYALKTPEIIRKQHSQPDNYTAIDTAQQYLDIFSVMRKRS
Length918
PositionHead
OrganismMeloidogyne hapla (Root-knot nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Meloidogynidae> Meloidogyninae> Meloidogyne.
Aromaticity0.07
Grand average of hydropathy-0.156
Instability index42.06
Isoelectric point6.08
Molecular weight102581.31
Publications









Function






Annotated function


GO - Cellular Component
clathrin-coated pit	GO:0005905	IEA:UniProtKB-KW
cytosol	GO:0005829	IEA:UniProtKB-SubCell
Golgi apparatus	GO:0005794	IEA:UniProtKB-SubCell
mediator complex	GO:0016592	IEA:InterPro
mitochondrial outer membrane	GO:0005741	IEA:UniProtKB-SubCell
peroxisome	GO:0005777	IEA:UniProtKB-SubCell
synaptic vesicle membrane	GO:0030672	IEA:UniProtKB-SubCell

GO - Biological Function
GTP binding	GO:0005525	IEA:UniProtKB-KW
GTPase activity	GO:0003924	IEA:InterPro
lipid binding	GO:0008289	IEA:UniProtKB-KW
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
mitochondrial fission	GO:0000266	IEA:InterPro
peroxisome fission	GO:0016559	IEA:InterPro
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro
rhythmic process	GO:0048511	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10662
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     616.10|     203|     237|     337|     555|       1
---------------------------------------------------------------------------
  337-  555 (313.96/261.14)	FGEA.....VIDK.NRTLLHIITHFATAYNSTIDGTARNIETTElcGGARICYIFHETFTRalecfdPLENLNKLDVLTAIRNATG....LRPSL..FIPEVSFELLVKKQIERLEEPAITCVdLVYEEMLRIVQHCGIEVQQEMQRFPHLYERIHEVINHVlsdrLPP..TKEF............VSNLVSiqlAYINTKHPEFASDASLINSLQGASSDESMAMITEKVPASEAADGKTTTA
  571-  799 (302.13/210.98)	FGESafyadIQNKvNLKKLHPTYWFNRNANKVEDDSDLGMDNGD..GSAGVLTRTDKTVRR......PLSVREKRDIAVIERLIKGyfiiVRKSIqdLVPKAIMNFLVNNVKENLQSELVRRL.YNADDLNTLLAESDAITQKRAESAEMLTEMIFEQAGAV....APPytSKHFrvdciwyrpqqhIATLIS...GFYVIHHSNFPDSAFIINANKPDSQPASESGSAERPTATRSSAAPRATA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.32|      41|     136|       5|      52|       2
---------------------------------------------------------------------------
    5-   52 (56.14/62.37)	IPVISKLqdvfaTIGCRGADVELpQI..VVIGsQSSGKSSAIEGIV..GRDF
  147-  191 (65.18/46.30)	LPGITKV.....PVGDQPADIEL.QIrkMLFG.YISNPNSIILSVMpaNQDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.96|      35|     577|     272|     310|       4
---------------------------------------------------------------------------
  272-  310 (53.86/53.41)	KYptlASQNGVPYLTKTLNRLLMvIFIYPFALK...LIYFQH
  855-  892 (58.10/42.40)	EY...AASNIVMQCHELLQEIID.IFFPDYALKtpeIIRKQH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10662 with Med20 domain of Kingdom Metazoa
Unable to open file!