<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10658

Description Uncharacterized protein
SequenceMEICAPSTSLATIDKQSEQQPKHSNFNYFAVGNEAEKLKWLVLQHVKPSTFKRIFAPLRSNKKPNRSDELTCIEACMLLKSIQDSPEKLEHACNGLISLLNNEKVHLYALDRIITKIITTAVEEKIISLLLACQLLVSSIDFRMERRPNPEKIKFVRKSMDQMDYKNMRDLVKLLLVEKLDKMYCELNEYQHQQLEPIEELVIDLIDRQKNFCPALFFITEVSRIDTDFSSIHFLPRVSLKIREMVASFRPLAEIGCMLGRSWMWPVPASPIFSWSSPTWSAWKLDEKHCKLHFKTHLPYSSENSSPQTYLQYVLFKQPHGQDNLNHILRPSSSTPQVQPSKLQCDEVIQLLILEAMSAMEDCEQPVLAPINQYNWLHLSHLVTYALTMGHCTLSQLLMMLLPQLRSCQYLHAKEELMWILLQYIAHAKSKEKYTQGSSSTTSILGLPASGGLGVQNRELVLEIFNVLYTDKSMNWGNSCSTEQPLEMVRFFAPAAIWSHLVTSLSAAPGSEQIPQPQPPEKLRKLIDFIENQLRDNKDQKQLERNSALLAVVANAYSNNLDVFDEHVNNTVFPELSKLGQQRNQTIPPTIQQEKWTLPVGRKTEPFLRALELTFLDSLTFHAKRQLYNYALNRVCKLILNQQQSAGHNQQQQPSFILRLPSPALVESIARLLLSTELCDENGKHFFNCTIATLNPAPGQPESQHMFLARNDFSALLLELLNFRLQNIGFAFILSIIDQLLNNPMVGSMPSNVQMAQLLEQTLLRFAQCTFPNDLINTLHQLWFVIPKMFKTLPEICRSFLLNAVRAFKLLGHVYKPCIDVQSVQSIPTTDDKTLMDSIPGLGVQWPRYELQWFPTTLQQVLYKQLAKDEEVWIANQTQRLLELEQASAQEMQHLVHLNHDYFMQNFQQSRTSPQPPTLFISIFRCLYQSQLPNFQFPQPLKPPHPSAPNFFALCYKILGALGNRELHKLTNALIDWLACKCGWLGQDSAPSPGHDEYDLNHILKVLNDMLFSHQVLSVDRLLFSIALHPTDDQSSRTLICLLAALLESKFSQLPERLHACYTFAPPHSQTTSSNSEEFFMQMVEYYKKYPEYSFNELYRRAFNPQAQQEASSQIHNLPVYYGHLAERICPIVDILLQKALSMDLKPAVMDTLLCHFSPIYRIHPQPMNFLYTTLYCLDGILLAHQQEAANCQSFLSRPVRKFVLEIVLKLEQEEMPQTPLGRNPVGKLLTTEFIQLDHQMPAVKFCRILVERIVQASTYTHQPPSFVHSDWRFAEFPPAAQALTSAWVELLASRHSAADIIEALVQLAIRRPISRPQDTLNALGLLLTGLPSSFQSAFLDKIEQSFDWEQISKNDSDPAQLFESLSHEVYLHSESQILSMLALFHSFCQHGGNNSLNIIPDLIVQRLSSKVQNEAQLIYFLRIVVPYLQRITEKERNRHMTEIVAIYQVLGNLTQKVGRLQYEDTICDLLYQFKYMFVGYLLKDQIEETIRSFPESMREKLKFLLTHSSAAANETQQQQMQQIIQQQQILVQHQSSFGNLLPGMPNAAAVMVHQQQHQQTLQQQSSFDHQPSSTPSLAGMIRRLSRTESDSASVMQQYGGIPPNTLEQQQNFAIHGMSNIQQQMSSSQQQHFPSSSSINPMMGNIPLPSMSSFPSSSNTNQGMQQQQQILPPPPPYSQQQSTSMGMMPTSTPFSGHQQIPSSSSSNMHYMMGPGPSNFGPPQAFINATQMAQNPMSFAAFQQQQHMAAQMSGSHHGGPVNLMGGGQQSTSGGGSQLPPNFPSGSQGGF
Length1789
PositionTail
OrganismMeloidogyne hapla (Root-knot nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Meloidogynidae> Meloidogyninae> Meloidogyne.
Aromaticity0.09
Grand average of hydropathy-0.262
Instability index59.03
Isoelectric point6.49
Molecular weight203458.23
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10658
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     233.08|      44|      63|    1538|    1582|       1
---------------------------------------------------------------------------
 1511- 1547 (61.72/30.39)	AAANETQQQQMQQII.......QQQQ.ILvQHQSS................................FGNLLP............GMPN
 1548- 1620 (62.62/34.56)	AAAVMVHQQQHQQTL.......QQQS.SF.DHQPSST...PsLAGMI....rrlsrtesdsasvmqqYGGIPPntleqqqnfaihGMSN
 1621- 1651 (43.69/19.06)	I........QQQMSS.......SQQQ.HF....PSSSsinP.MMGNI....................P...LP............SM..
 1665- 1726 (34.96/13.57)	........QQQQQILpppppysQQQStSM.GMMPTST...P.FSGHQqipsssssnmhymmgpgpsnFGP..P............QAFI
 1727- 1752 (30.08/10.25)	NATQMAQNPMSFAAF.......QQQQ.HM.AAQMS......................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.17|      30|      99|     884|     928|       2
---------------------------------------------------------------------------
  488-  520 (46.38/18.56)	MVRffAPAAIWSHLVtSLSAAPGSEQIPQ....PQPP
  884-  917 (51.79/52.48)	LEQ..ASAQEMQHLV.HLNHDYFMQNFQQsrtsPQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.50|      62|     116|     288|     366|       3
---------------------------------------------------------------------------
  288-  366 (103.30/104.23)	KHCKL.................HFKTHLPYssensspqTYLQYVLF.....KQPHGQDNLNHIL.RPSSSTPQVQPSKlqcdeviqlLILE.........AMSAMEDC..EQP
  390-  485 (82.19/53.26)	GHCTLsqllmmllpqlrscqylHAKEELMW........ILLQYIAHakskeKYTQGSSSTTSILgLPASGGLGVQNRE.........LVLEifnvlytdkSMNWGNSCstEQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     326.48|      85|     115|    1002|    1090|       4
---------------------------------------------------------------------------
  926-  962 (51.32/17.73)	....................................................C..LYQSQLPN.F.QF....PQPLK.....................PP...H.....PSAPNFFALCYKILGAL
 1002- 1090 (143.58/67.04)	HILKVLNDMLFSHQ........VLS..VDRLL...FSIALHPTDDQSSRTLIC..LLAALLESKFSQL....PERLHA...C............YTFAPP...HSqttsSNSEEFFMQMVEYYKKY
 1116- 1173 (68.50/25.07)	HNLPVYYGHLAERI........CPI..VDILLqkaLSMDLKPA...VMDTLLC..........HFSPIyrihPQPMNF...L............YT..............................
 1175- 1270 (63.09/22.52)	..LYCLDGILLAHQqeaancqsFLSrpVRKFV...LEIVLKLEQEEMPQTPLGrnPVGKLLTTEFIQL....DHQMPAvkfCrilverivqastYTHQPPsfvHS.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     366.03|     120|     172|     543|     672|       5
---------------------------------------------------------------------------
  543-  672 (187.75/143.84)	LERN..SALLAVVANAYSNN......LDVFDEHVNNTV...FPELSKLGQQRNQTIpptIQQEKWTLPvgrktEPFLRAL.ELTFLDSLTFHAKRQLY.NYALN..RVCKLILNQQQSAGHNQQQQPsfILRLPSPALVESIARL
  708-  842 (178.28/112.89)	LARNdfSALLLELLNFRLQNigfafiLSIIDQLLNNPMvgsMPSNVQMAQLLEQTL...LRFAQCTFP.....NDLINTLhQLWFVIPKMFKTLPEICrSFLLNavRAFKLLGHVYKPCIDVQSVQS..IPTTDDKTLMDSIPGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.28|      20|     174|    1305|    1329|       6
---------------------------------------------------------------------------
  238-  259 (31.06/15.49)	VSLKIREMVAsfRP...LAEIGCML
 1306- 1328 (29.22/25.64)	VQLAIRRPIS..RPqdtLNALGLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.35|      23|      40|    1351|    1390|       8
---------------------------------------------------------------------------
 1351- 1373 (39.96/55.56)	QISKNDSDPAQLFESLSHEV.YLH
 1407- 1430 (33.39/11.06)	RLSSKVQNEAQLIYFLRIVVpYLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.52|      15|      22|    1753|    1767|      10
---------------------------------------------------------------------------
 1753- 1767 (30.04/15.32)	GSHHGGPVNLMGGGQ
 1772- 1786 (29.47/14.89)	GGGSQLPPNFPSGSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10658 with Med23 domain of Kingdom Metazoa
Unable to open file!