<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10654

Description Uncharacterized protein
SequenceMECTDKTIYEKLLSALSIWNMRATYFDFKLIINETFPESQMSKLGNGNQQLANHYQMTMFLFNNIATAIHQLFVSRLTLKERENEEELNINDFRPSAINCFWQIASLITAMPSPPPPTGMSSQNPHWCPWIGSAMKAYFLKVVAENLKTTEKDAKNKQSENNEQLKYEQLLAYQPFLNLVMACTEGEEVKQLVDTLLDYLDDVVARVRKVGENPIIPHQSYFLSERDGVILRLNLIVGLFDTLTTNSNAEFWASALFQLLYFEILTYERDTIYFDTCLDMLLMLVHKMYPHKTYSTFVSKFKVNFRISDELYALQQLLPVPKSQAELTAWDSFSNSIPHNKLIAQGSTTSSKGGANTSQPNQQQTQPNLPVAKPQVQGIVIDKQQVPIHKQILRMLKHEHWMQRQTGPNGEQSISFIPRPGIVGEERMGGTIRDPFLAPPEMEQVYIVKPPDKGQEGQQQQSYQQNIMAVQHHQQQPHHQHQQQHQQRMIPTTQQPPTEQQYKMESDQQQLQQMRLAAYQSQQQQIKMEQKMIAQQQNVQMHPGMMQPNPSHQQFHQHQKQQQHQKQQQHQQMLQHQQMMSMTGSIPPGAIMGEPGPSGIQNPFPPQQPIINLLQQSQSVRSSGSNTPNLTDSPRTGGGRGGRRKSGPGTNPSGVGRGQKKKKEARQQQMANQMMGGMGMDMFAATGGSGPSPGMVTSAQGPTQMSMSSHAVMMAQQQQQMSHLHWQQQMQQRQQQQQQMQAPPQQGNIGQTQVSAPLPPPYMMYNNQQQSMQQPPPQFRMQLPQQQQPQPPPQYHSPIPQQQQNRNNQQYSQQQQMAGISGIGTPLQSHQQQQPMSDIKKNIQHKLLQKKQSEFKKEKKRVFLNL
Length866
PositionKinase
OrganismMeloidogyne hapla (Root-knot nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Meloidogynidae> Meloidogyninae> Meloidogyne.
Aromaticity0.07
Grand average of hydropathy-0.826
Instability index66.67
Isoelectric point9.23
Molecular weight98966.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10654
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     285.97|      37|      38|     512|     548|       1
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  464-  496 (49.74/11.17)	QQ.NIMAVQHHQQQPHHQH.....Q....QQHQQRM....IP.....T..TQQ...P
  512-  548 (68.40/18.05)	QQMRLAAYQSQQQQIKMEQ.....KM.IAQQQNVQM....HP.....G..MMQ...P
  553-  595 (41.66/ 8.19)	QQFH..QHQKQQQHQKQQQ...hqQM.LQHQQMMSMtgsiPP.....GaiMGE...P
  719-  757 (40.16/ 7.64)	QQMSHLHWQQQMQQ...RQ.....Q....QQQQMQA....PPqqgniG..QTQvsaP
  758-  798 (44.31/ 9.17)	LPPPYMMYNNQQQS..MQQpppqfRMqLPQQQQPQP....PP.....Q..YHS...P
  803-  839 (41.70/ 8.20)	QQNRNNQQYSQQQQMAGIS.....GI.GTPLQSHQQ....QQ.....P..MSD...I
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     227.71|      57|     246|     403|     462|       2
---------------------------------------------------------------------------
  371-  429 (62.99/25.47)	.......VAKPQVQGIVI....DKQ..QVPIHKQIlrmlkhehwmQRQTGP.........NGEQsiSFI...PRPGIV....GEERMG
  430-  462 (40.77/13.95)	GTIRDPFLAPPEMEQVYIvKPPDKG..QEGQQQQS.....................................................
  599-  642 (61.63/21.36)	G.IQNPF.............PPQQPiiNLLQQSQS..........VRSSGS.........N.T...PNLtdsPRTG......GG.RGG
  643-  705 (62.32/21.69)	RRKSGPGTNPSGV.G....RGQKKK..KEARQQQM.........aNQMMGGmgmdmfaatGGSG........PSPGMVtsaqGPTQM.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.00|      37|      75|     217|     254|       3
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  217-  254 (61.57/50.98)	PHQSY..FLSERDgVILRL.NLIVGLFDTL.TTNSNAEF..WAS
  290-  332 (48.42/34.02)	PHKTYstFVSKFK.VNFRIsDELYALQQLLpVPKSQAELtaWDS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10654 with Med12 domain of Kingdom Metazoa
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