<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10634

Description Uncharacterized protein
SequenceMFLQFFSPCYKFHPQPSNFVYSTLFCLDHVCHTNHARQFAVTIIKSSEDKQMIRDREQILTSSFTKDNHQSQEPSEFCEQLVTRVIDACVYVHVPPSFIVRDWRFAEHSPAAQALFGACIELMASPHNASVTARALIEIALKRSASGKPYEVVNAVALILTALPHSFQVVLLEQLRLTVNSDELKHSDPAKTCFDPYSDQIFLYGENRLISMLAMAHAYWQHVGLGMITELFEFIRDKLAEIGMITELFEFIRDKLAEIVETESQLIYVIRIIVPFLQKLNDFKERAKNTQDLVVVIYKMLRRVVELRDRVPLRYEDTICDVLYHAKYMFVAAEPXXXXCDVLYHAKYMFVGDAVKNEAEMTIQQLNPSMQEKLKFLLSSQPSDHGTTVTTTTTTASMPAPAVTTSSTMSSVPSMSSDVPASASFPNLVAQNQNPPSLSASSASEPPSLIPVSSAPNMMMPPGPSMSMMNSPMPGSVPMMMPPSSMFSQPGQQGMMMNPPPTMSMGGEGGGGGMPMPSMMGFPGSGHHGPR
Length531
PositionTail
OrganismSteinernema glaseri
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Steinernematidae> Steinernema.
Aromaticity0.08
Grand average of hydropathy-0.066
Instability index56.55
Isoelectric point5.86
Molecular weight58515.00
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10634
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.31|      15|      15|     226|     240|       1
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  226-  240 (31.65/25.24)	GMITELFEFIRDKLA
  243-  257 (31.65/25.24)	GMITELFEFIRDKLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.90|      15|      19|     474|     492|       2
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  475-  492 (23.98/15.49)	GSVPMmmPpSSM.FSQPGQ
  512-  527 (26.92/10.32)	GGMPM..P.SMMgFPGSGH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.06|      12|      19|     320|     331|       3
---------------------------------------------------------------------------
  320-  331 (28.53/21.91)	CDVLYHAKYMFV
  340-  351 (28.53/21.91)	CDVLYHAKYMFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.43|      11|      36|     458|     468|       4
---------------------------------------------------------------------------
  458-  468 (27.49/11.71)	MMMPPGPSMSM
  495-  505 (25.94/10.66)	MMMNPPPTMSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.52|      18|      29|     406|     427|       5
---------------------------------------------------------------------------
  406-  427 (25.32/19.12)	SSTMSSVPSMssdVPASaSFPN
  440-  457 (32.20/13.56)	ASSASEPPSL...IPVS.SAPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.45|      14|      31|     164|     177|       6
---------------------------------------------------------------------------
  164-  177 (24.77/15.80)	PHSFQVVLLEQLRL
  196-  209 (26.68/17.52)	PYSDQIFLYGENRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.55|      27|      38|      64|      90|       7
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   64-   90 (47.40/28.54)	FTKDNHQSQEPSEFCEQLVTRVIDACV
  105-  131 (46.15/27.62)	FAEHSPAAQALFGACIELMASPHNASV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.65|      15|      23|     272|     286|       8
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  272-  286 (24.71/19.05)	IIVPFLQKLNDFKER
  296-  310 (23.94/18.23)	VIYKMLRRVVELRDR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10634 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKFLLSSQPSDHGTTVTTTTTTASMPAPAVTTSSTMSSVPSMSSD
2) PASASFPNLVAQNQNPPSLSASSASEPPSLIPVSSAPNMMMPPGPSMSMMNSPMPGSVPMMMPPSSMFSQPGQQGMMMNPPPTMSMGGEGGGGGMPMPSMMGFPGSGHHGPR
374
420
418
531










Molecular Recognition Features






MoRF SequenceStartStop




1) MEEASQNFRRTLNAIDTEMSAQLDYMSNVCVAMPHQGSTTASYQNIESINDTNKMLAEQLNQIHEKYLAEENRDYDETL
1
79