<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10628

Description Uncharacterized protein
SequenceMGVAAEARQTSSLTASWMVACAPQLQLPDSSQYMQVPSAAVDQLKQRLLLAVENGNPSDAIEVIAQLEKSPLTKEILEATRIGATVNDVRKRTGSSFPDLSKKCRGLIKLWQKLLENRPSSSNGTSSNGGTPNTPCIRRGLTPQTPGRKCTPSARTQLVSPDPNGTSYAPQDEKVPSKDVHLPKSHSVGSELCRAESRMSGKNTSPIVKLSRKRTAETTSSPEAIASQKRPKPTENQQKQTPSTSPSTPHVSVLAARRQNAVPTSNLLAQLYDDPVNRQLGKAIQKPLTPAINQKPLTPAKPERKATEKPATPRMKVATPPVSNGVAAKLKPATIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRQGKA
Length398
PositionUnknown
OrganismSteinernema glaseri
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Steinernematidae> Steinernema.
Aromaticity0.02
Grand average of hydropathy-0.687
Instability index52.10
Isoelectric point10.27
Molecular weight36882.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10628
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.29|      41|      63|     222|     262|       1
---------------------------------------------------------------------------
  226-  282 (56.87/22.50)	ASQKRPKPTENQQKQTPSTS.......PSTPHVSVLAARRQNAVptsnllaqlyddpvnrQLGK
  283-  335 (58.42/23.28)	AIQKPLTPAINQKPLTPAKPerkatekPATPRMKVATPPVSNGV...........aaklkPATI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.32|      14|      15|     134|     147|       2
---------------------------------------------------------------------------
  134-  147 (27.99/12.53)	TPCIRRGL.TPQTPG
  151-  165 (21.32/ 8.11)	TPSARTQLvSPDPNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.51|      13|      15|     192|     206|       5
---------------------------------------------------------------------------
  192-  206 (19.74/15.51)	LCRaeSRMSGKNTSP
  210-  222 (21.77/10.83)	LSR..KRTAETTSSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10628 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LENRPSSSNGTSSNGGTPNTPCIRRGLTPQTPGRKCTPSARTQLVSPDPNGTSYAPQDEKVPSKDVHLPKSHSVGSELCRAESRMSGKNTSPIVKLSRKRTAETTSSPEAIASQKRPKPTENQQKQTPSTSPSTPHVSVLAARRQNAVPTSNLLAQLYDDPVNRQLGKAIQKPLTPAINQKPLTPAKPERKATEKPATPRMKVATPPVSNGVAAKLKPATIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRQGKA
115
398










Molecular Recognition Features






MoRF SequenceStartStop




1) MKRTLED
2) SDGEERKFKRHKSEAKEKKEKKKKKDKKKKKGDDESRKHRKSQ
3) SPSAFNMQL
4) SYPFYGMKEL
171
183
228
29
177
225
236
38