<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10614

Description Uncharacterized protein
SequenceMRLDSLANVDKRISDMLKSAQHVITELSKERQGTAFMANEKGCAIDDTNTMLLEEIDRVSRAHFEEEPKTEEENQESPDEEEDQESPXXXXQESPEEEEKQDSPDEEEDQESPEEEENQESPDEEENQEXXXXFVLMNPQGNQYVPPKLQANQVLQMRLNSLAAVDTRIGHMMKCAHHVIGELARERQTTKAKTEDSVQDFKRCLNFIESTMLRELNYLETFCASSNHQGSAFMAKENGSAVDDINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEKQESPEEEVYQVDDMIL
Length333
PositionHead
OrganismSteinernema glaseri
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Steinernematidae> Steinernema.
Aromaticity0.04
Grand average of hydropathy-1.106
Instability index73.19
Isoelectric point4.24
Molecular weight29619.85
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10614
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.09|      16|      24|      75|      98|       1
---------------------------------------------------------------------------
   65-   87 (29.37/ 8.70)	EEEpkteeenQESPDEEEDQESP
   96-  113 (30.73/17.77)	EEE.....ekQDSPDEEEDQESP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.48|      36|     196|      14|      49|       2
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   14-   49 (65.75/42.64)	SDMLKSAQHVIT.ELSKERQGTAFMANE.....KGCAIDDTN
  170-  209 (52.60/32.76)	GHMMKCAHHVIG.ELARERQTTKAKTEDsvqdfKRC.LNFIE
  210-  246 (55.13/34.66)	STMLRELNYLETfCASSNHQGSAFMAKE.....NGSAVDDIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.91|      14|     197|     115|     128|       3
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  115-  128 (26.49/17.31)	EEENQESPDEEENQ
  314-  327 (26.42/17.24)	DEEKQESPEEEVYQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10614 with Med11 domain of Kingdom Metazoa
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