<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10593

Description Uncharacterized protein
SequenceMVACAAVATQPPVSLAVPMTPCTLTVEQLKQHLLSAIENGKCETACDVLSELEKVPINKEILESTRVGAIVNDVRKKTVEQWPLLSKRCRALIKAWQKLVEVRPTSSGTSSANGTPNLVSPGAAKLSRRVTPCTPVNRRVTSTGMSAGRSTTVSPANSSYAPKELSSPTNGVLHKSQSVGADLLSRGDDIRNGKRKADDVPAVVPFAMKRTKTAIGSLASPASTASTPQSVLAARKAVQSTTELVAQLSQNLPEHMSIDSSIREHEEKVKREQQDEELAMQLYGGASTSSPYIQIERKKENTRGDRNQLKFLLHLVSAPEERRGGLILRLPRIAPIKEDTQEDIQSPLTSRPTSSLTRPESAGSSKVDWFAMLPSLDELKSKAEQIRAVRAEPDQHDPTKAYLMRVKERDVLALPYLDVPIKPDFIQYRYPDGGQYYAEENFSYGAVRPS
Length450
PositionUnknown
OrganismHeterorhabditis bacteriophora (Entomopathogenic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Strongyloidea> Heterorhabditidae> Heterorhabditis.
Aromaticity0.04
Grand average of hydropathy-0.474
Instability index56.02
Isoelectric point9.20
Molecular weight49215.47
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10593
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.98|      28|      39|     359|     387|       1
---------------------------------------------------------------------------
  359-  387 (44.30/32.38)	PESAGSSKV...DWFAmLPSLD.ELKSKAEQIR
  398-  429 (41.68/25.31)	PTKAYLMRVkerDVLA.LPYLDvPIKPDFIQYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.25|      20|      33|     100|     132|       2
---------------------------------------------------------------------------
  100-  121 (32.03/33.94)	VEVRPTSSGTSSanGTPNLVSP
  136-  155 (36.22/12.32)	VNRRVTSTGMSA..GRSTTVSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.72|      30|      37|     239|     273|       3
---------------------------------------------------------------------------
  241-  273 (40.72/41.76)	TTELVAQL....SQNLPeHMSIDSsiREHEEKVKREQ
  275-  308 (45.00/26.60)	DEELAMQLyggaSTSSP.YIQIER..KKENTRGDRNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10593 with Med26 domain of Kingdom Metazoa
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