<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10578

Description Uncharacterized protein
SequenceMASNGGSLEDCFSNVFALTELNGLKWRCFLTPQNAPRGVPIPSDPVLKAYGRCLQDGLICTWRRKPLQIPTEGPEPLPLPSFTNDISKELWLFWYSSEPPEGISEYTSHLEGDESGVGSALNGISYEVRVLFFKALHTGIERSVSKAGFVRFGRWFTRPLRQPLSGRQHLLSHYVLAFNMQFFIHGGNTVCMTLNAQRQPPLLRLAKRHLDCGRRVQVVVGPWSLRAVLLPGDTDAGRNQASADRQWEEWKEFVALGHDPEDLDDESREEGVPRMVTLELDGIRMLYPSCYVCVTMEDDAASCPKESQSAPVPSMTPDELITSDNGRRNRLLVSNVNGQMYMQGVLQNAHLSRRNITTIPAAPQNGPFQAPYPPQSDDETKYGGILRTLVVRIHVHVMNVNFNQVLSTGVGAKLNNFLMHYYIVNSDSISYFRFFGKAKSGRYSYVVYANTVPVVESFISRYSYHRRHCLSSTADSASLPRLSSPEEDTVDTEHDTSDDDIIHPAWADASKESLVTGIYCSADDARYTHCLPVFSQYLTTNTYTMIITIYCTYSYFWVILGCLFRLCHRVVIALGLVHLRIKSQKLFSMKFFTLESVSISCNFSIIPKYYIIYLLLI
Length617
PositionMiddle
OrganismHeterorhabditis bacteriophora (Entomopathogenic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Strongyloidea> Heterorhabditidae> Heterorhabditis.
Aromaticity0.11
Grand average of hydropathy-0.170
Instability index47.27
Isoelectric point6.65
Molecular weight69662.68
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10578
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.83|      10|      38|     266|     275|       1
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  266-  275 (18.90/11.71)	ESREEGVPRM
  306-  315 (18.92/11.73)	ESQSAPVPSM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10578 with Med13 domain of Kingdom Metazoa
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