<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10573

Description Uncharacterized protein
SequenceMSPRIKDVIIKNGIVSIVVPGEFEVQLTVLGETENLKWTLLNIKILVEDYEIGYGTQLVHPLQLNMLHNVLQSRMDVSKNGSAQVRFPTILIMLRNFSLKSSKYFLTFKGSAAPCLSLPLLRDKSTAGSRTELRELEKALYDGQSVESLRKLLDRLKLALTTVVFNKILLMIERYRRSVATLQVRIINEAQMAPFFKKVHSLPPDRICMQFIKEEHFYLVVTFEADENLTVQMGLYLLCTLDEKTQMMELNREKQLIAAPIEHVIKIESSTYGNTSVDDEWVPACKPSMERQLTSAVAAVDDRISFMRVCEELDKKGIRYNSIEAEPEVGGLTLHITDSFVFSVSKVVDLQCAEFFRNMVRCCLRLDNRSRVLWPFECCMINIPLVESYTIYLVLELFSLVILGHSIYYPFLQVRISVSTVCPPPLNSDPSTPHTPISVCNINFYFHLDPISMNIKLTLDYGGPYSRFMFYWYMVFITRCIYEYIIFMYPNLYITNFLCLEKFFFICFRPSRTSIDRTNEKHLLRLIYNMQTNKVLKMKTQQLCFLPVLKKLFDQGNARYGQQYVNLLTGNCLSSIYKKVYTKELIVLHTSHNLKRSF
Length598
PositionTail
OrganismHeterorhabditis bacteriophora (Entomopathogenic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Strongyloidea> Heterorhabditidae> Heterorhabditis.
Aromaticity0.11
Grand average of hydropathy0.063
Instability index41.26
Isoelectric point8.73
Molecular weight69302.57
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10573
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.89|      17|      17|     124|     140|       1
---------------------------------------------------------------------------
  124-  140 (26.24/21.08)	KSTAGSRTELRELEKAL
  144-  160 (25.65/20.43)	QSVESLRKLLDRLKLAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.84|      35|     303|      89|     123|       2
---------------------------------------------------------------------------
   89-  123 (62.05/33.08)	TILIMLRNFSL....KSSKY.FLTFKGSAAPCLSLPLLRD
  390-  429 (53.79/27.88)	TIYLVLELFSLvilgHSIYYpFLQVRISVSTVCPPPLNSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.61|      53|     303|     186|     241|       3
---------------------------------------------------------------------------
  186-  241 (84.18/67.29)	IINEAQMAPFFkkVHSLPPDRICMQFIKEEHFyLVVTFEADENLTVQMGLYLLCTL
  494-  546 (93.44/62.99)	ITNFLCLEKFF..FICFRPSRTSIDRTNEKHL.LRLIYNMQTNKVLKMKTQQLCFL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10573 with Med14 domain of Kingdom Metazoa
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