<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10565

Description Uncharacterized protein
SequenceMSTNMEATTTSSVSLTAAVGNDAEKLQWIVLNQVEGVQMREMFWDLSKDVDVDVLACSEAIKLLRTMTEEEKAQCCKASLTLLSNKDDPRHIHYERILSSIFMSACNEGVLPLSDCCELLILCTNFTLTTPIDSRKFEYMQKNLHLIDYKGLRNILKLLVVERMQEVPSTITHHHRHMLLPVENMLLTLIDRQLNLLPCIFTITELHRVSSNSRAFLLPRVAKKFNDMFISFRPLTEMVTIIGRSWLYPVAAHISFPVSTPSWKLEVTTTRLHQRAHLPYKSELFAPQSFLLYTLLRQPRGKDTISYVMRQNTNLTPQRLQCDELLHMIILEAMSEMEKTDTRLDDPANQYQWMNITQTVTFSLLHGNASFSRLLKILYESLSETVYRKGRDELMWVILQYVAVYIDRVSNEEMIRVAEIYNLLYSDEQTWSGADTDPLLFVRFLVPAAIWIHFYKKLGNSHTEVLPKPSESLWRQIQFLQERTADSDPNIQNVADHNAVLAAVANAYSSDMPNFQKLVLTAVDVFLDGSPEEMNTVWHLPHGIISYSKKTPLPLSLIDSLTFHARNHLFQLCLLKLTAMLSVQQTQKLPSPATIDTLVRLAVTTEFEYGVKQVLALLSSTLASVNKNSNLGPVQQDRSRDLLFVLCDILSYRFISYALPVGSKVNLMLWCYTALGNNQVQMNIALCSALEQVMLRYWMWNSPQEMFYLSNAFLGKQGKLAVIFNTANPAFCDPQHGNVPIEQQYTNSHLSLELLRCLLLSMFRSLKMTGMEMTTEMMQRCNVNFCWPLSINRTYSSQLTGCNIDDGAADTVMYDELMHRVIQEVHQAQEIIYAQGLAAEEQLLKFFSGERKQTVFCVVYNMLFETKKIHPVIYSVLNSMNSKELTATVNKFTDYFIFIFKKNLPSDDQQFAAMIGILNDMVFNLHLISLDRLLLSLVLHPTDDGATEIAMLIIHSLVGSYPDLHNRITALVHIIPSNKIGNTSAAFFNKMSEYYSQFPELSYREMEAKMRREMQIELGMRPIEQPTLSPELHMPIYYGNIVERILPIVDIILFRAIETVVADQLFTTLLMCFKPCYRYHPQPAAYMYSVLYCLDKTISHTVRARDFVLEICGQLEDRDGKYALLTPSFISDNHQLSLPSQFCQALVDRILQASNYAHQPPAFAYKDWRFAEMPPAGQALTGACIELLASPHAPVITAHALIDLVFIRPLHQPYATINAVALILTALPVSFQQVFYDHIVSVLDSEALHGDPSVCFGSLESECLLLTENQLLTNLALGHAYLQHCNASSLAALPEFVRDQLAPKLVTEAQLIFVLRLVVPILQRFYDAKERSKQIQDLAVDVYKMTVKVNERAGILKYEDSICDFLYHMKYMYVGDFVKNEAEQAIQRLSPSMRDKLKYISHTQINATIDLPHKLAPGSSSLF
Length1423
PositionTail
OrganismLoa loa (Eye worm) (Filaria loa)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Loa.
Aromaticity0.09
Grand average of hydropathy0.022
Instability index45.57
Isoelectric point6.02
Molecular weight162341.38
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10565
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.28|      26|      33|     917|     947|       1
---------------------------------------------------------------------------
  917-  947 (35.81/34.04)	ILNDMV...FNLHlislDRLlLSLV.LHPTDD.GAT
  953-  983 (31.47/16.57)	IIHSLVgsyPDLH....NRI.TALVhIIPSNKiGNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.65|      34|      39|     549|     582|       2
---------------------------------------------------------------------------
  549-  582 (58.34/32.39)	KKTPLPLSLIDSLTFHARNHLFQLCLLKLTAMLS
  587-  619 (50.04/26.82)	QKLPSP.ATIDTLVRLAVTTEFEYGVKQVLALLS
  627-  647 (26.27/10.90)	KNSNLGPVQQD....RSRDLLFVLC.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.27|      28|      37|    1127|    1162|       3
---------------------------------------------------------------------------
 1090- 1123 (39.60/13.62)	VLYCLDktiSHTVrarDFVLEICGQLEDR...DGKYA
 1127- 1157 (44.67/34.02)	PSFISD...NHQL...SLPSQFCQALVDRilqASNYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.55|      20|      37|    1265|    1284|       4
---------------------------------------------------------------------------
 1265- 1284 (34.66/26.09)	LLTENQLLTNLALGHAYLQH
 1305- 1324 (32.89/24.31)	LVTEAQLIFVLRLVVPILQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.24|      21|      39|     161|     181|       5
---------------------------------------------------------------------------
  161-  181 (40.72/24.30)	VERMQEVPS..TITHHHR......HMLLP
  191-  219 (27.53/14.11)	DRQLNLLPCifTITELHRvssnsrAFLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.12|      24|     286|     227|     256|       7
---------------------------------------------------------------------------
  227-  256 (33.15/33.57)	DMFISFRPlTEMVTIigrsWLYPvAAHISF
  524-  547 (47.97/26.65)	DVFLDGSP.EEMNTV....WHLP.HGIISY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.73|      43|     175|    1030|    1073|      16
---------------------------------------------------------------------------
 1030- 1073 (72.21/55.86)	PeLHMPIYYGNIVERIL...PI.VDIILFRAIETVV.ADQLFTTLLMCF
 1209- 1256 (63.52/43.85)	P.LHQPYATINAVALILtalPVsFQQVFYDHIVSVLdSEALHGDPSVCF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.66|      13|      33|    1158|    1170|      18
---------------------------------------------------------------------------
 1158- 1170 (28.42/17.28)	HQP..PAFAYKDWRF
 1192- 1206 (19.25/ 9.44)	HAPviTAHALIDLVF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10565 with Med23 domain of Kingdom Metazoa
Unable to open file!