<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10557
Description |
Mediator complex subunit rgr-1 |
Sequence | MDDEEYMKPILPTVPEKCGPPVIPLGYLIEFAIQQIFHELTVLSELLPKKLDSDRKISIVQFAHSTRVLFIKLLAVVKWVKSSKKFESCASICYFLDQQSQYFVDTADRLVQLAREELVFARLPIFQVALAVDVLTVGTFPRLPLCIKNRFIPDPPITPREEACVLARLNQVIQYRLSSYGTKLSPRISKTVIRNGMATMTVNGEFEVSLTLLGERPTTKWTLLNIRILVEDYEIGFGTKLVHPLQVNMLHNVLQLRMDKSLEPLEEVYNLLHSFAQTLQLDVLFCQATQVFSGEMCQYAVIERYDRNIGILTLAYWLKRTHSRYTSQYRIKIFIDKENGNSGLRVRHFPVGKGLPYIDDRSGRLSVNRLLSETVGIRCRERLLRIRERLGLLKPPVIVSLTGRAAPTLTYPLLGTQSHADEMLVVSINDFSGNVVAIVRALGPCPELRELEQLIDDRVPLQAITDKMDRLRILLMLERYRKAVAPLPVRIVPENVFCTRLSSLPELPPDRICLQFIKEEMYYLIVSFTPSEQIGVNIDMYLLSNVERKLNMVRLHPSQLLTTLPESSFPSARNDDDLEPPAKRRRWLGDRRLLTSAVATLDDRLAFMRICEELNRRNVKYKPLTVEPTVGGLILHITDFSEAIPAGSDDFFSSVINCCLRLDTRTRVIWPFECTLINTPLVADFYEPIMRIDYESTKTKTTVMEIHGSGGVSSPNTSESVSTHMIDRLIVFAHMFDPVKEFAAAYYNYYNKYCNVVAFTYHKLVLAYGSNRNMLMILSWRTQKAPNNKQYFYLTFGIGPRRRTTADLTNSETLWNPHVLLASRLQERFNKQRSLIGLVQYLIDSVAPLSALHSFTRIRLQSLRAFCQMMCYDAALALGLQVTLSIVNEYRIRLIYGHVYLEFILLGNSRIGLRDCSLGSNCAFRLRQFCSNFLSPELRSTNEEKSPSAFGWIAASSGPGSLPSHQMVRSPASRIVSSPMSHMSLSVPPIDSFGSSLRYSSDYRSKTPILLDHDSLHCMTSADESGNCPLDQYLFALAYLSKLGPALEGYRREHRGSGAHPVIQFRQLIATPESVRLSVLGAAPPNLKHEPFLVNMNIYLDEETMSLKMKLDFDGDDIPADSDIRTAELYFVRFVARLGNEIAVVAFANACRLAAPGAFSAIARIMSVQMNWTEDTPWRPSIQLVMWSQEGSVPRARISPGIVIDQTNISVLILLCLRPARHNPSEKNADASKHLIPLIYNTQTNTVARRSSGADDDASNATTVLSNVSEQYSLTNEPALWPAIYSLAHNFTVQR |
Length | 1295 |
Position | Tail |
Organism | Loa loa (Eye worm) (Filaria loa) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida>
Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Loa.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.060 |
Instability index | 46.07 |
Isoelectric point | 8.67 |
Molecular weight | 146610.92 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP10557
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.16| 16| 269| 712| 727| 3
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712- 727 (29.24/15.34) VSSPNTSESVSTHMID
976- 991 (30.92/16.60) VSSPMSHMSLSVPPID
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.72| 14| 15| 111| 124| 4
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111- 124 (22.89/14.26) VQLAREELVFARLP
128- 141 (22.83/14.21) VALAVDVLTVGTFP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 111.83| 37| 269| 522| 573| 5
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372- 412 (55.33/27.44) SETVGIRCRERLLRIRER.LGL..LKPPVIvsLTgrAAPTLTYP
531- 570 (56.49/43.97) SEQIGVNIDMYLLSNVERkLNMvrLHPSQL..LT..TLPESSFP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 95.37| 28| 257| 583| 610| 6
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583- 610 (48.40/33.02) KRRRWLGDRRLLTSAVATLDDRLAFMRI
831- 858 (46.97/31.81) KQRSLIGLVQYLIDSVAPLSALHSFTRI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 249.06| 74| 391| 743| 830| 7
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756- 830 (127.17/90.61) VVAFTYHKLVLAYGS....NRNMLMILSWR..TQKAPNNKQYFYLTFGIGPRRRTTADLTNSETLWNPHVLLASRlQERFN
1144- 1223 (121.89/61.33) VVAFANACRLAAPGAfsaiARIMSVQMNWTedTPWRPSIQLVMWSQEGSVPRARISPGIVIDQTNISVLILLCLR.PARHN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.00| 20| 970| 260| 316| 9
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280- 314 (22.23/84.97) QLDVL..FCQatqvfsgEMCqyavierYDRNIGiLTL
859- 880 (34.77/ 7.09) RLQSLraFCQ.......MMC.......YDAALA.LGL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 93.98| 27| 97| 947| 973| 12
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947- 973 (50.28/35.86) PSAFGWIAASSGPGSLPS...HQMVRSPAS
1045- 1074 (43.70/30.06) PALEGYRREHRGSGAHPViqfRQLIATPES
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