<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10550

Description Uncharacterized protein
SequenceMDDAMELLDALSALPVDINILTKTRIGMTINDLRKKTSDEHIAKRAKALIKEWKVLLANKTSSSKGDAKDAVAKNSSSPSVSSTTFNESSKHLSQSSVSQKCTSSGTANSSTPTPTARKQLLPDEVRNKCATMILDALLSKELPDGTLDPEELAVRTERKLFEVHRGTSEKYRAALRSRVFNLRDKKNLVLRENVLIGAVTPEKFAVMTADEMASDEMKAQREKFTKQAIEEYQMAVQEGTPSDMFKCGKCGKKNCTYTQVQTRSADEPMTTFVFCRECGNRWKFC
Length286
PositionUnknown
OrganismLoa loa (Eye worm) (Filaria loa)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Loa.
Aromaticity0.05
Grand average of hydropathy-0.568
Instability index46.67
Isoelectric point9.01
Molecular weight31833.06
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10550
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.39|      22|      25|      63|      84|       1
---------------------------------------------------------------------------
   63-   84 (36.97/20.50)	SSKGDAKDAVA.KNSSSPSV.SST
   89-  112 (29.41/15.13)	SSKHLSQSSVSqKCTSSGTAnSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.23|      26|      26|     227|     252|       2
---------------------------------------------------------------------------
  203-  230 (33.73/20.08)	EKFAVMTADE.MASDEMK.AQreKFTKQAI
  231-  256 (47.85/31.21)	EEYQMAVQEG.TPSDMFK.CG..KCGKKNC
  257-  280 (22.66/11.35)	TYTQVQTRSAdEPMTTFVfCR..ECG....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10550 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SKGDAKDAVAKNSSSPSVSSTTFNESSKHLSQSSVSQKCTSSGTANSSTPTPTARKQLLP
64
123










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRAKALIKEWKVLLA
43
58