<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10543

Description Uncoordinated protein 78
SequenceMASTEEYVQDATFASLPRTVRGMPLSLHASPDGQKLIYCNGNSVYIRSIQNPKECEIYTEHANPTTVAKYSPSGFYIASGDQSGKIRIWDATQPTHILKAEYPILSGPVRDIAWSDDSKRIAVVGEGRERFGHVFLFDTGTSNGNLSGQSRTMSSIDFRPARPYRLVSGSEDNTVALFEGPPFKFLTLFHEHTRFVYCVRYNVSGTLFASSGADGKVILYDGTSGQKEGEFVDDQCKGMAHAGSVFALCWSPDGQHIATASGDKTIKIWDIASRKLEKTFVIGKNVDDQQLSIVWTKAFLAGVSLSGFINILDLESCSVSKVLKGHNKPITALTVCPEKALAFTADFEGNITRWCLNSGDSERLLPAVHSSQVSDMSVSPNGDLVSVGWDDSIAFTSFPGSLDHVQSNKVKLSSQPRQLALGSGGKIAVVACQKSVTVFSDGKQTISENIDYEASCVAVAPDSRLTAVGSQEGKVHVYELNSNQMKEIKTISQTGSITSLSWSPNGNFLVATDTNRKVIPYSVDNDYKCVTEKEWTFHSARVNCSAWSPDSRFVATGGIDTNVIVWDLNHSGEHPIIIRGAHTMSPINGIDWLGPNRIITVGQDSVLKIWTVIV
Length614
PositionTail
OrganismLoa loa (Eye worm) (Filaria loa)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Loa.
Aromaticity0.09
Grand average of hydropathy-0.187
Instability index33.85
Isoelectric point6.07
Molecular weight66873.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10543
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     418.47|      42|      42|     297|     338|       1
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   71-  113 (45.06/24.38)	.SPSG..FY..IA.....SGDQSG...KIRIWD..ATQPTHI.LKA...........EypilSGPVRDIA
  114-  157 (44.89/24.26)	WSDDS..KR..IA.....VVG.EGrerFGHVFLFDTGTSNGN.LSG...........Q....SRTMSSID
  158-  200 (41.04/21.55)	FRPARpyRL..VS......GSEDN...TVALFEGPPFKFLTL.FHE...........H....TRFVYCVR
  201-  249 (41.27/21.71)	YNVSG..TL..FA.....SSGADG...KVILYDGTSGQKE.....GefvddqckgmaH....AGSVFALC
  250-  292 (42.63/22.67)	WSPDG....qhIA.....TASGDK...TIKIWDIASRKLEKTfVIG...........K....NVDDQQLS
  293-  334 (49.25/27.33)	IVWTK..AF..LA.....GVSLSG...FINILDLESCSVSKV.LKG...........H....NKPITALT
  335-  377 (51.97/29.26)	VCPEK..AL..AF.....TADFEG...NITRWCLNSGDSERL.LPA..........vH....SSQVSDMS
  378-  416 (28.73/12.86)	VSPNG..DL..VSvgwddSIAFTS...FPGSLD..HVQSNKV..KL...........S....SQP.....
  459-  501 (50.63/28.31)	VAPDS..RL..TA.....VGSQEG...KVHVYELNSNQMKEIkTIS...........Q....TGSITSLS
  548-  570 (22.98/ 8.81)	.SPDS..RF..VA.....TGGIDT...NVIVWDLNH..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.57|      26|     471|      30|      55|       2
---------------------------------------------------------------------------
   30-   55 (49.48/31.35)	SPDGQKLIYCNGNSVYIR.SIQNPKEC
  503-  529 (43.09/26.44)	SPNGNFLVATDTNRKVIPySVDNDYKC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10543 with Med16 domain of Kingdom Metazoa
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