<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10533

Description Uncharacterized protein
SequenceMNFAKVSSQQNQQLYSEASKIPTGSGLARDSPEDMSSSKDPDKDARKGKIPRRPEFNNGGSLEDCISNVYALLDLPGIKWKCFRPKPNAPRGLPLASDNVLKAYSKCINAGILSTWRRKPLPPSDNNEMLQAPHFSNDSAKELWVFWFDEEPESLLKYCEGLDSDEELSSANQMNIVSYEVRTILFKALHVVLERDLTKDGFVRFGRWFTVPFEARENYLHYMYPTHSPAIRFNFLFMDQTLFALQYKPRDSQHLFVWLNVISNIK
Length266
PositionMiddle
OrganismCaenorhabditis tropicalis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.12
Grand average of hydropathy-0.524
Instability index49.88
Isoelectric point6.96
Molecular weight30593.38
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10533
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.90|      10|      26|      93|     103|       1
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   93-  103 (14.07/11.32)	LPlASDN..VLKA
  121-  132 (15.82/ 7.69)	LP.PSDNneMLQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.57|      28|      31|       7|      37|       2
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   10-   37 (47.33/30.04)	QNQQLYSEASKIPTGSGLAR.DSPEDMSS
   39-   67 (45.24/21.58)	KDPDKDARKGKIPRRPEFNNgGSLEDCIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.20|      10|      31|      77|      87|       3
---------------------------------------------------------------------------
   77-   87 (18.76/15.12)	GIkWKCFRPKP
  111-  120 (20.44/11.40)	GI.LSTWRRKP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10533 with Med13 domain of Kingdom Metazoa
Unable to open file!