<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10519

Description Uncharacterized protein
SequenceMSASTGHFPGAPFNADPVTTMATSSSQPVTSSSGASQIPPQATQHNQGASTSAVPTEQPTQSARGAEQPPGTAKQAVTEPTVATTSATASTSTTTTTTTTTTTATGRFTPQIPPDFCLFLIRKLRSKQNMITHTFLDNAVDKENLKITLQHYKEYGHMTQEAMIYWEKLDAICRRLPRVVPPTDNVNMMRTLYTQEHTMCHMDINGLLERMIDSGNWNEGNFQIFHYLSELLRANFNRRPNNFPEVRQLPPPVFHMQATNSHATFEKAYSMMKQEIVHRSLGIYPKTLNHTSSSLVVEFLFGCGGTRVVTDSDIIYTMKFLLVERNGSIEYINMVAPHEKWFVSNNYGIDSVDPFVPSSYEVYRRLTRQANIHLLSCFGSTANRWSSTALLQFISLFGKFREVFTTRCRVCRYHFRFIPLEIIFFCRRHLKNFLPPLIFDIRNPSFAAHEACR
Length453
PositionTail
OrganismCaenorhabditis tropicalis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.322
Instability index45.36
Isoelectric point9.00
Molecular weight51276.79
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10519
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.60|      14|      18|      38|      51|       1
---------------------------------------------------------------------------
   18-   31 (18.93/ 8.68)	VTTMATSSSQPVTS
   38-   51 (26.67/15.23)	IPPQATQHNQGAST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.92|      10|     251|     173|     182|       2
---------------------------------------------------------------------------
  173-  182 (21.73/12.42)	CRR.LPRVVPP
  426-  436 (17.20/ 8.50)	CRRhLKNFLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.27|      13|      18|      72|      84|       3
---------------------------------------------------------------------------
   72-   84 (21.11/13.30)	TAKQAVTEPTVAT
   93-  105 (21.16/13.35)	TTTTTTTTTTTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.19|      15|      18|     365|     379|       5
---------------------------------------------------------------------------
  365-  379 (27.29/16.17)	RLTRQANIHLLSCFG
  384-  398 (26.90/15.86)	RWSSTALLQFISLFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10519 with Med27 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSASTGHFPGAPFNADPVTTMATSSSQPVTSSSGASQIPPQATQHNQGASTSAVPTEQPTQSARGAEQPPGTAKQAVTEPTVATTSATASTSTTTTTTTTTTTATGR
1
107










Molecular Recognition Features






MoRF SequenceStartStop




NANANA