<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10518

Description Uncharacterized protein
SequenceMSGQGQGQGQPPNMNQQQQMLIQQQQMMRQQEIHRQQQMQQRQMQPHAQQTFQRARTPQMPQHPAGGSPGGSHLQMHPHLQPQGHMQPRSPLVASQLQAPGSVPAGNPATPQMMQQQMGLNQPIQSQYPMHLQPQQPHSRPGSQQGHHMISHGGPQSVQQPGSVQRPGSVIAPGSIQPPGSHGGPSSQSVVGGPPSHSAVGGPQSVQNYGPGSVQQPGSAQAPSSVQPPSAFAPGSVQAPASQQPPSSIQPPPSAASSSAVPASQNPKEPLKPNEEQIRMVQDPVDLVRNLVQKDLRNCMMDMNKRAAELIRQKHEDNVVRDEDRAQYKRAENDFNAVCDEIERTLTTIMETAKQFTKLDKVFVDRSSKELDGENMVNCVQSFVESTEIVQKMFDDTIGGVTNSMQKMRRRQKKWEEQREAQESEDTEMAE
Length431
PositionTail
OrganismCaenorhabditis tropicalis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.03
Grand average of hydropathy-0.986
Instability index78.69
Isoelectric point6.96
Molecular weight47341.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10518
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     284.01|      47|      47|     133|     179|       1
---------------------------------------------------------------------------
   55-   87 (45.67/ 9.47)	ARTPQ...................mPQHP......AG..GSPGGSHlqMHP..HLQPQ..GHMQ
   88-  116 (43.77/ 8.75)	PRSPLVASQLQAPGSV.PA................................gnPATPQ..MMQQ
  117-  160 (72.88/19.82)	QMGLNQPIQSQYP.......mhlQ.PQQP......HSRPGSQQGHH..MIS..HGGPQ..SVQQ
  161-  208 (72.67/19.74)	PGSVQRPGSVIAPGSIQPPgshgG.PS.S......QSVVGGPPSHS..AV....GGPQ..SVQN
  232-  283 (49.02/10.75)	...FA.PGSVQAPASQQPP.ssiQ.P..PpsaassSAVPASQNPKE..PLK..PNEEQirMVQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.99|      13|      17|      16|      31|       2
---------------------------------------------------------------------------
   16-   31 (21.04/12.83)	QQQQMliqQQQMMRQQ
   35-   47 (26.95/10.11)	RQQQM...QQRQMQPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.13|      16|      17|     308|     323|       3
---------------------------------------------------------------------------
  286-  303 (16.75/10.30)	.DLVRnlvQKDLRNCMMDM
  308-  323 (26.67/20.50)	AELIR...QKHEDNVVRDE
  326-  341 (26.71/20.54)	AQYKR...AENDFNAVCDE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10518 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DMNKRAAELIRQKHEDNVVRDEDRAQYKRAEND
2) MSGQGQGQGQPPNMNQQQQMLIQQQQMMRQQEIHRQQQMQQRQMQPHAQQTFQRARTPQMPQHPAGGSPGGSHLQMHPHLQPQGHMQPRSPLVASQLQAPGSVPAGNPATPQMMQQQMGLNQPIQSQYPMHLQPQQPHSRPGSQQGHHMISHGGPQSVQQPGSVQRPGSVIAPGSIQPPGSHGGPSSQSVVGGPPSHSAVGGPQSVQNYGPGSVQQPGSAQAPSSVQPPSAFAPGSVQAPASQQPPSSIQPPPSAASSSAVPASQNPKEPLKPNEEQIRMVQDPVDL
302
1
334
287










Molecular Recognition Features






MoRF SequenceStartStop




NANANA